BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05460.1
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477834 jgi|Araly1|477834|fgenesh2_kg.3__535__AT3G05460.1 363 1e-99
> Ahg477834 jgi|Araly1|477834|fgenesh2_kg.3__535__AT3G05460.1
Length=460
Score = 363 bits (196), Expect = 1e-99
Identities = 294/339 (87%), Gaps = 16/339 (5%)
Strand=Plus/Plus
Query 278 CAAACAGAGGCAGTGGATATCT-TCACGATGATCCTCCTTGCAACCCAAGAGATCCAAAG 336
|||| ||||||||||| || | |||| |||| ||||||||| ||||| |||||||||
Sbjct 134 CAAATAGAGGCAGTGGGGAT-TATCAC---GATCATCCTTGCAATCCAAGCGATCCAAAG 189
Query 337 TGCATAGTA-AAACCTTGTAATCCAGAGAATCCAAATTGCAGAATGGAACAAGGTGCCAT 395
||| | | |||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 190 TGC---G-ACAAACCTTGTAATCCAGAGAATCCAAATTGCAGAATGAAACAAGGTGTCAT 245
Query 396 TAAGCCAAACAGAGGCAGTGGATATCTTCACGATGATCCTCCTTGCAATCCAAGA-GATC 454
| ||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct 246 TGAGCCAAATAGAGGCAATGGGTATCTGCACGATGATCCTCCTTGCAATCCAA-ATGATC 304
Query 455 CAAAATGCATAGTAAAACCTTGTAATCCAGAGAATCCAAATTGCTAAAAGAAACAAGGCG 514
|||| ||| | ||| |||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 305 CAAAGTGCG-AC-AAA-CCTTGTGATCCAGAGAATCCAAATTGCTGAAAGAAATAAGGCG 361
Query 515 TTGATAGTA-AAGAAGCAGTATTGGTAGCAATGGGAATGTAAGTTATAAGATATGTGAAT 573
||||| | | ||||||||| | ||||||| |||||||| ||| | |||||||||||||||
Sbjct 362 TTGATGGGACAAGAAGCAGAAATGGTAGCTATGGGAATTTAAATGATAAGATATGTGAAT 421
Query 574 GCCTTATAAAACGCATTTTATTGAATAAAACGTGTTTGT 612
||||||||||||| |||| ||||||||||||||||||||
Sbjct 422 GCCTTATAAAACGTATTTAATTGAATAAAACGTGTTTGT 460
Score = 348 bits (188), Expect = 3e-95
Identities = 328/390 (84%), Gaps = 32/390 (8%)
Strand=Plus/Plus
Query 1 ATCACTAAAAGCAAAATACACCGTAACAGTTTTCGTTGGAAGATGAAGAACGTTTCCTTT 60
|||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATCATTAAAAGCAAAATACACTGTAACAGTTTTCTTTGGAGGATGAAGAACGTTTCCTTT 60
Query 61 CAGCTTTTGTTTTTGGTTTCTCTTCTTGTTCTTGTCTTTGGACATGATCTTGTGAAAGGT 120
|| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 CAACTTTTGTTATTGGTTTCTCTTCTTGTTCTTGTCTTTCGACATGATCTTGTGGAAGGT 120
Query 121 AGGACAATGGATACAAATGGTGGCGGCGTGCATACAAATAGAGGCAGTGGATTTTTTCAC 180
| || || || |||||||||||||||||||||| || ||||
Sbjct 121 ------A-GG--AC-AA-----------TGCATACAAATAGAGGCAGTGGGGATTATCAC 159
Query 181 GATAATCCTCCTTGCAATCCAAGAGATCCAAAGTGCATAGATAAACCTTGTAATCCAGAG 240
| ||| ||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 160 G---ATCATCCTTGCAATCCAAGCGATCCAAAGTGC---GACAAACCTTGTAATCCAGAG 213
Query 241 AATCCAAATTGCAGAATGGAACAAGGTGCCATTAAGCCAAACAGAGGCAGTGGATATCTT 300
|||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||| |||||
Sbjct 214 AATCCAAATTGCAGAATGAAACAAGGTGTCATTGAGCCAAATAGAGGCAATGGGTATCTG 273
Query 301 CACGATGATCCTCCTTGCAACCCAAGA-GATCCAAAGTGCATAGTAAAACCTTGTAATCC 359
|||||||||||||||||||| |||| | |||||||||||| | ||| |||||| ||||
Sbjct 274 CACGATGATCCTCCTTGCAATCCAA-ATGATCCAAAGTGCG-AC-AAA-CCTTGTGATCC 329
Query 360 AGAGAATCCAAATTGCAGAATGGAACAAGG 389
|||||||||||||||| ||| | || ||||
Sbjct 330 AGAGAATCCAAATTGCTGAAAGAAATAAGG 359
Score = 97.1 bits (52), Expect = 1e-19
Identities = 96/115 (83%), Gaps = 12/115 (10%)
Strand=Plus/Plus
Query 401 CAAACAGAGGCAGTGGATATCT-TCACGATGATCCTCCTTGCAATCCAAGAGATCCAAAA 459
|||| ||||||||||| || | |||| |||| ||||||||||||||| ||||||||
Sbjct 134 CAAATAGAGGCAGTGGGGAT-TATCAC---GATCATCCTTGCAATCCAAGCGATCCAAAG 189
Query 460 TGCATAGTA-AAACCTTGTAATCCAGAGAATCCAAATTGCTAAAA-GAAACAAGG 512
||| | | |||||||||||||||||||||||||||||| | || |||||||||
Sbjct 190 TGC---G-ACAAACCTTGTAATCCAGAGAATCCAAATTGC-AGAATGAAACAAGG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22568766864
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5