BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05470.1
Length=2655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317406 jgi|Araly1|317406|fgenesh1_pm.C_scaffold_3000422 4100 0.0
Ahg907643 jgi|Araly1|907643|Al_scaffold_0002_724 219 1e-55
> Ahg317406 jgi|Araly1|317406|fgenesh1_pm.C_scaffold_3000422
Length=2691
Score = 4100 bits (2220), Expect = 0.0
Identities = 2542/2693 (94%), Gaps = 40/2693 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTATTTTCGTCAGATTTTTCTCATGATCATTGTAGTTTCATTACACTGCTGCAAA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTTTATTTTCGTCAGATTTTTCTCATGATCATTGTAGTTTCGTTACACTGCTGCAAA 60
Query 61 GTTAGATTCTTTTGCATTGTTGCTAATGCTAAAGAGCTTGATGACTGGAAGGTGTTAACG 120
| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGTCGATTCTTTTGCATTGTTGCTAATGCTAAAGAGCTTGATGATTGGAAGGTGTTAACG 120
Query 121 GTGGAAAACGGTGAAAGATACCGAACCCATGTCGGAAGATACGCCGGAGAAGAGGGCGGC 180
|||| ||||||||| |||||||||||||| ||||||| ||||||||||||||| || |||
Sbjct 121 GTGGTAAACGGTGAGAGATACCGAACCCAAGTCGGAAAATACGCCGGAGAAGACGGAGGC 180
Query 181 GAGAAGATAAAGCTTCGAGTTTTGGAAAAGTTTCGAGCTTTACTCGATTTGATTAAACCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GAGAAGATAAAGCTTCGAGTTTTGGAAAAGTTTCGAGCTTTACTCGATTTGATAAAACCT 240
Query 241 TCTACTTCACGGAGAAGAAATCTCGCCGAGTCTGCTTCTTTCTCTCCTTGGCCGGCGCCG 300
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTACTTCCCGGAGAAGAAATCTCGCCGAGGCTGCTTCTTTCTCTCCTTGGCCGGCGCCG 300
Query 301 TCGCCGTCTCCGTTTCCCAACGGTGGTCCAATCGAATCTCCGGCGTATCCTCCAGCTCCT 360
|| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TCTCCGTCTCCGTTTCCCAGCGGTGGTCCAATCGAATCTCCGGCATATCCTCCAGCTCCT 360
Query 361 CCACGACCGATTCCTCCACATCTCCGTCGTCCGTTACCTCAACGGACCCATCCATTGGAA 420
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 361 CCACGGCCGATTCCTCCACATCTCCGTCGTCCGTTAGCTCAACGGACCCATCCATTGAAA 420
Query 421 CAACCCGAGATTCAACGGCGAAAACATGAGAAAGGAGGAACATTTAAGAAGATTCTTGTA 480
|||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||
Sbjct 421 GAACCCGAGATTCAAAGGGGAAAACACGAGAAAGGAGGAACACTTAAGAAGATTCTTGTA 480
Query 481 CCTGTCGTTGCTTCCACAGCTTCTGCAATCGGTTTCGTAGTATGTGTCGTTGGAGTGTTC 540
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 481 CCTGTCGTTGCTTCTACAGCTTCTGGAATCGGTTTCGTAGTTTGTGTCGTTGGAGTGTTC 540
Query 541 TGTCTCTGCGCGAgaagaaaaaggaa-aatgaacggtaaaacgctgtcgtttaaaaggaa 599
||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 541 TGTTTCTGCGCGAGAAGAAAACGGAAGAA-GAACGGTAAAACGCTGTCGTTTAAAAGGAA 599
Query 600 aaagggaaaatctcaaagCTCGACGAGGAAGGTTAGTGTAAACCCTACTCTCGATTTCTT 659
|||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 AAAGGGCAAACCTCAAAACTCGACGAGGAAGGTTAGTGTAAATCCTACTCTCGATTTCTT 659
Query 660 GTACCTAAACTCACTAGGAGTTGACTTGGAGAGACAAAACTCTGTTTCTGTTAAAGAAAT 719
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GTACCTAAACTCACTGGGAGTTGATTTGGAGAGACAAAACTCTGTTTCTGTTAAAGAAAT 719
Query 720 ACGAGAAACAGAGAAGGATTTGAACG-GTATCAATGGTGGATTGCTTGAAGAAGAGGTAA 778
||||||||| |||||||||||||||| | | |||| ||||||| ||||||||||||||||
Sbjct 720 ACGAGAAACCGAGAAGGATTTGAACGAG-AACAATAGTGGATTACTTGAAGAAGAGGTAA 778
Query 779 AGAGAAGTATAGAAACAGAGATCTCACATGATTGGGACAATGCTAGTAGTTATTCGACCA 838
|||||||||||||||||||||| || || |||||||||||||||||||||||||| || |
Sbjct 779 AGAGAAGTATAGAAACAGAGATTTCGCAAGATTGGGACAATGCTAGTAGTTATTCAACTA 838
Query 839 AAGAGATTGTGTCGGTGCACGAAAATGATGAAGAACAAACAGTAAACTCTGTTTCTG-T- 896
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 839 AAGAGATTGTGTCGGTGCACGAAAATGATGATGAACAAACAGTAAACTCTGTTTCTGTTC 898
Query 897 -TCCTGTTGT--T--GT-AAT-CAATGATTCTTCAGACGATGATGAGTCTTTTCATTCCG 949
||||||||| | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCCTGTTGTAATCAATGGATGCAATGATTCTTCAGACGATGATGAGTCTTTTCATTCCG 958
Query 950 TTGGTGGTGGCTCTCAGTATTCAAATCCAAGATTGTCAAATGCTTCCTCTGCTTCTGGTA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 959 TTGGTGGTGGCTCTCAGTATTCAAATCCAAGATTGTCAAATGCTTCCTCTGCTTCTAGTA 1018
Query 1010 GTGTTAACGTTGGTTCCTCTCAACGCTTCTCAGAACACAAATTGGATATTCCTGAATGTT 1069
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTGTCAACGTAGGATCTTCTCAACGCTTCTCAGAACACAAATTGGATATTCCTGAATGTT 1078
Query 1070 CTAGAAGCGACTTCGGAATCTCTGTATCTGCTCCACCA---CCACCACCTCCACCGCCTC 1126
| |||| |||||||||| ||||||| |||||||||||| || ||||||||||||||||
Sbjct 1079 CCAGAAACGACTTCGGAGTCTCTGTCTCTGCTCCACCACCGCCGCCACCTCCACCGCCTC 1138
Query 1127 CACCGCTTCCGCAGTTCTCTAACAAACGTATTCACACCCTGTCTTCGCCAGAAACCGCTA 1186
|||||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1139 CACCGCTTACGCAATTCTCAAACAAACGTCTTCACACTCTGTCTTCGCCAGAAACCGCTA 1198
Query 1187 ATCTTCAGACGCTTTCGTCGCAATTATGTGAAAAACTTTGTGCTTCTTCCTCGAAGACAA 1246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCTTCAAACGCTTTCGTCGCAATTATGTGAAAAACTTTGTGCTTCTTCCTCGAAGACAA 1258
Query 1247 GCTTTCCGATCAATGTACCAAA-T-TC-----------TC---A-----ACCGCGTCCAC 1285
|||||||||||||||||||||| | || || | ||||| |||||
Sbjct 1259 GCTTTCCGATCAATGTACCAAATTCTCAAGAAAATGGTTCTAAATCTCTACCGCATCCAC 1318
Query 1286 CGCCACCACCGCC-C--CCGCCACAACAGCTTCAAGTAGCTGGAATTAATAAAACGCCTC 1342
||||||||||||| | ||||||||||||||| || |||||||||| || ||||||||||
Sbjct 1319 CGCCACCACCGCCGCTACCGCCACAACAGCTTAAATTAGCTGGAATGAACAAAACGCCTC 1378
Query 1343 CACCGCCATTGTCTCTTGATTTTTCTGAGCGTAGACCATTAGGCAAAGACGGAGCTCCAT 1402
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 CACCGCCATTGTCTCTTGATTTTTCTGAGCGTAGACCATTAGGCAAAGACGGAGCTCCTT 1438
Query 1403 TGCCTAAACTGAAGCCACTTCACTGGGATAAAGTCAGGGCTACACCAGACCGGACTATGG 1462
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGCCTAAACTGAAGCCTCTTCACTGGGATAAAGTCAGGGCTACACCAGACCGGACTATGG 1498
Query 1463 TTTGGGATAAGCTCAGAACAAGCTCTTTTGAATTAGACGAAGAGATGATTGAGTCACTGT 1522
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 TTTGGGATAAGCTCAGAACAAGCTCTTTCGAATTAGACGAAGAGATGATTGAGTCACTGT 1558
Query 1523 TTGGATATACGATGCAAAGCTCAACGAAGAATGAGGAAGGGAAGAGCAAAACTCCATCAC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTGGATATACGATGCAAAGCTCAACGAAGAATGAGGAAGGGAAGAGCAAAACTCCATCAC 1618
Query 1583 CAGGGAAACACCTTCTTGAACCTAAAAGACTTCAGAATTTTACCATTCTCTTGAAAGCTC 1642
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1619 CAGGGAAACACCTTCTTGAACCTAAGAGACTTCAGAACTTTACCATTCTCTTGAAAGCTC 1678
Query 1643 TCAACGCAACCGCGGACCAAATCTGCTCTGCCTTGGGGAAAGGGGAAGGCTTGTGTTTAC 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCAACGCAACCGCGGACCAAATCTGCTCTGCCTTGGGGAAAGGGGAAGGCTTGTGTTTAC 1738
Query 1703 AGCAACTAGAAGCGTTGGTGAAGATGGTGCCGACTAAAGAAGAAGAGTTGAAGCTGCGTA 1762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1739 AGCAACTAGAAGCGTTGGTGAAGATGGTGCCGACTAAAGAAGAAGAGTTGAAGCTGTGTA 1798
Query 1763 GCTACAAAGGAGCCGTGGATGAGCTTGGCTCAGCTGAGAAGTTTCTCAGAGCTCTTGTTG 1822
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1799 GCTACAAAGGAGCCGTGGATGAGCTTGGATCAGCTGAGAAATTTCTCAGAGCTCTTGTTG 1858
Query 1823 GAGTTCCATTTGCGTTTCAGAGAGCTGAAGCAATGCTTTATAGAGAAACGTTTGAAGATG 1882
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 GAGTTCCATTTGCGTTTCAGAGAGCTGAAGCGATGCTTTATAGAGAAACGTTTGAAGATG 1918
Query 1883 AAGTGGTTCATCTCAGAAACTCCTTCTCCATGCTTGAGGAAGCTTGCAAGGAGCTTAAAT 1942
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1919 AAGTAGTTCATCTCAGAAACTCCTTCTCCATGCTTGAGGAAGCTTGCAAGGAGCTTAAGT 1978
Query 1943 CAAGCAGGTTATTCTTGAAGCTTCTAGAAGCTGTCCTAAAGACTGGAAACAGGATGAATG 2002
||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1979 CAAGCAGGTTATTTTTGAAGCTTTTAGAAGCTGTTCTTAAGACTGGAAACAGGATGAATG 2038
Query 2003 TAGGAACCATACGCGGTGGTGCAAAAGCATTCAAGCTCGATGCTCTGCTTAAACTCTCTG 2062
||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 2039 TAGGAACCATACGTGGTGGTGCAAAAGCCTTCAAGCTCGATGCTCTGCTCAAGCTCTCTG 2098
Query 2063 ATGTTAAAGGCACAGATGGAAAGACTACTCTGCTTCATTTTGTTGTACAAGAGATCTCTA 2122
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2099 ATGTTAAAGGCACAGATGGAAAGACCACTCTGCTTCATTTTGTTGTGCAAGAGATCTCTA 2158
Query 2123 GGTCTGAAGGAATCAGGGTTTCAGACAGCATCATGGGACGGATCATGAACCAGAGATCAA 2182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 GGTCTGAAGGAATCAGGGTTTCAGACAGCATCATGGGACGGATCATGAACCAGAGATCAA 2218
Query 2183 ACAAGAACCGAACACCTGAGGAGAAAGAGGAGGATTACAGAAGGATGGGGCTCGATCTCG 2242
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2219 ACAAGAACAGAACACCTGAGGAAAAAGAGGAAGATTACAGAAGGATGGGGCTCGATCTCG 2278
Query 2243 TCTCGGGTCTAAACACAGAGCTACGAAACGTGAAGAAGACGGCAACGATTGATCTGGAAG 2302
| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2279 TTTCGGGTCTAAACACAGAGCTAAGAAACGTGAAGAAGACGGCAACTATTGATCTGGAAG 2338
Query 2303 GTCTTGTTACCTCGGTGTCCAATCTGAGAGATGGGTTGGGGCAGTTGAGCTGTCTTGCGA 2362
||||||||| ||||||||| || |||||||| ||||||||||| ||||| ||||| ||||
Sbjct 2339 GTCTTGTTAGCTCGGTGTCTAACCTGAGAGACGGGTTGGGGCAATTGAGGTGTCTAGCGA 2398
Query 2363 GTGAGAAGCTGAAAGGGGACGAAGAAAACAGAGCATTTGTTAGTTCGATGAGCTCGTTTT 2422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2399 GTGAGAAGCTGAAAGGGGACGAAGAAAACAGAGCATTTGTTAGTTCGATGAGCTCGTTCT 2458
Query 2423 TGAGATACGGCGAGAAGAGCTTGGAGGAATTGAGGGAAGACGAGAAGAGGATAATGGAGA 2482
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2459 TGAGATACGGAGAGAAGAGCTTGGAGGAGTTAAGGGAAGACGAGAAGAGGATAATGGAGA 2518
Query 2483 GGGTTGGAGAGATTGCAGAGTATTTTCATGGAGATGTGAGAGGAGATGAGAAGAACCCAT 2542
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2519 GGGTTGGAGAGATTGCAGAGTATTTTCATGGAGATGTGAGAGGAGATGACAAGAACCCGT 2578
Query 2543 TGAGGATCTTTGTGATTGTAAGGGATTTTCTAGGGATGTTGGATCATGTTTGTAGAGAAT 2602
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2579 TGAGGATCTTTGTGATTGTAAGGGATTTTCTGGGGATGTTGGATCATGTATGTAGAGAAT 2638
Query 2603 TGAGGTGTGTTAGGGTTCCCAATAGCCCTAGCCCTTTGGCTCCGTTTCGATGA 2655
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 TGAGGTGTGTTAGGGTTCCCAATAGCCCTAGCCCTTTGGCTCCGTTTCGATGA 2691
> Ahg907643 jgi|Araly1|907643|Al_scaffold_0002_724
Length=267
Score = 219 bits (118), Expect = 1e-55
Identities = 143/155 (92%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 2203 GAGAAAGAGGAGGATTACAGAAGGATGGGGCTCGATCTCGTCTCGGGTCTAAACACAGAG 2262
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 112 GAGAAAGAGAAGGATTACAGAAGGATGGGGCTCGATCTCGTCTCGTGTCTAAATACAAAG 171
Query 2263 CTACGAAACGTGAAGAAGACGGCAACGATTGATCTGGAAGGTCTTGTTACCTCGGTGTCC 2322
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 CTACGAAGCGTGAAGAAGACGGCAACGATTGATCTGAAAGGTCTTGTTACCTCGGTGTCT 231
Query 2323 AATCTGAGAGATGGGTTGGGGCAGTTGAGCTGTCT 2357
||||| |||||||||||||| | |||| | |||||
Sbjct 232 AATCTAAGAGATGGGTTGGGACCGTTG-GATGTCT 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100139254105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5