BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05480.3
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477837 jgi|Araly1|477837|fgenesh2_kg.3__538__AT3G05480.1 1674 0.0
> Ahg477837 jgi|Araly1|477837|fgenesh2_kg.3__538__AT3G05480.1
Length=1368
Score = 1674 bits (906), Expect = 0.0
Identities = 960/986 (97%), Gaps = 3/986 (0%)
Strand=Plus/Plus
Query 467 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 445
Query 527 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCATGCATCCTCGAAATCTGAGCAAGTTGC 586
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 446 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCGTGCATCCTCGAAATCTGAGCAAGTTGC 505
Query 587 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATTATTGCTACAGACCAAACTTCTT 646
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 506 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATAATTGCTACAGATCAAACTTCTT 565
Query 647 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAAGCTGTTGAGTTTCGGAGCTATGTGG 706
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 566 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAATCTGTTGAGTTTCGGAGCTATGTGG 625
Query 707 ATCCTACCAAAGATGGTGACTCTTTGTTACATACACAGCTATGGATTGATCCATCAGAAG 766
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 626 ATCCTACCAAAGATGGCGACGCTTTGTTACATACTCAGCTATGGATTGATCCATCAGAAG 685
Query 767 AATTTTTGCAGTATACTCACGCAGGTGATCCAGTTGACATCACATTTTCCTTGAAGGAAC 826
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 686 AATTTTTGCAGTATACTCACGCAGGTGATCCCGTTGACATCACATTTTCCTTGAAGGAAC 745
Query 827 TAAAGGCATTTCTTGCATTCTGCGAGGGCTGTGAAGCCGATATTCATCtttttttCGAAA 886
||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 746 TAAAGGCATTTCTGGCATTTTGTGAGGGCTGTGAAGCTGATATTCATCTTTTTTTCGAAA 805
Query 887 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 865
Query 947 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 925
Query 1007 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 985
Query 1067 CACGGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGAGCACCCATCTGATCACACACGAG 1126
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 986 CACAGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGTGCACCCATCTGATCACACACGAG 1045
Query 1127 TATGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1186
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TTTGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1105
Query 1187 AGGCTCAGGGACAACCAGACTTGGATATCCATAGAATTAGGAATATGGAAATATCAAAAG 1246
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 AGGCTCAGGGACAACCAGACTTGGATATCCAAAGAATTAGGAATATGGAAATATCAAAAG 1165
Query 1247 GCGGGCCAGTTGGAGATACTGCTCCTGCAGCTCCTCCTAAGTCCCAACGTCCCACACAGA 1306
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1166 GCGGGCCAGCTGGAGATACTGCTCCTGCAGCTCCT---AACTCCCAACGTCCCACACAGA 1222
Query 1307 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1282
Query 1367 CTAGTAATTGGGTGGATGCAAATGAGGAAGAAGAAGATGACGACGAAGGTGTCGAGGCGA 1426
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1283 CTAGTAATTGGGTAGATGCAAATGAGGAAGAAGACGACGACGAAGAAGGTGTCGAGGCGA 1342
Query 1427 CACCACCTCACAATGAAGATTATTAA 1452
| ||||||||||||||||||||||||
Sbjct 1343 CGCCACCTCACAATGAAGATTATTAA 1368
Score = 604 bits (327), Expect = 4e-172
Identities = 367/386 (95%), Gaps = 4/386 (1%)
Strand=Plus/Plus
Query 33 aaggtttaaattaaaatttgaatttatttttCT--CCAGAGACAGAGAGAGATGGAGTTG 90
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 AAGGTTTAAATCAAAATTTGAATTTATTTTTCTAGAGAGAGAGAGAGAGAGATGGAGTTC 60
Query 91 AGTATCAGTGGCAATGCGCTCAAGACC-TTGTCTAGGTCTATAATCTGCCTCGCACGCGT 149
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 AGTATCAGTGGCAATGGGCTCAAGACCTTTG-CTAGGTCTATAATCTGCCTCGCACGCGT 119
Query 150 CGGTAACGAGCTCGTTGTCCAAGCTTCGCCGACACAGCTGGCATTGCACACTTTGAATGC 209
||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 120 CGGCAACGAGCTCGTCGTCCAAGCTTCGCCGACGCGGCTGGCATTGCACACTTTAAATGC 179
Query 210 TTCACGTTCTGCCTATCAGTGTATCACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 269
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TTCACGTTCTGCCTATCAATGTATTACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 239
Query 270 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 299
Query 330 CCCTCTCGCGAGCATTGATCATATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 389
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCCTCTCGCCAGCATTGATCACATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 359
Query 390 CAAATGGACTTTGCAGTGTTACAGTG 415
||||||||||||||||||||||||||
Sbjct 360 CAAATGGACTTTGCAGTGTTACAGTG 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5