BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05480.3 Length=1553 Score E Sequences producing significant alignments: (Bits) Value Ahg477837 jgi|Araly1|477837|fgenesh2_kg.3__538__AT3G05480.1 1674 0.0 > Ahg477837 jgi|Araly1|477837|fgenesh2_kg.3__538__AT3G05480.1 Length=1368 Score = 1674 bits (906), Expect = 0.0 Identities = 960/986 (97%), Gaps = 3/986 (0%) Strand=Plus/Plus Query 467 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 445 Query 527 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCATGCATCCTCGAAATCTGAGCAAGTTGC 586 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 446 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCGTGCATCCTCGAAATCTGAGCAAGTTGC 505 Query 587 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATTATTGCTACAGACCAAACTTCTT 646 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 506 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATAATTGCTACAGATCAAACTTCTT 565 Query 647 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAAGCTGTTGAGTTTCGGAGCTATGTGG 706 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 566 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAATCTGTTGAGTTTCGGAGCTATGTGG 625 Query 707 ATCCTACCAAAGATGGTGACTCTTTGTTACATACACAGCTATGGATTGATCCATCAGAAG 766 |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 626 ATCCTACCAAAGATGGCGACGCTTTGTTACATACTCAGCTATGGATTGATCCATCAGAAG 685 Query 767 AATTTTTGCAGTATACTCACGCAGGTGATCCAGTTGACATCACATTTTCCTTGAAGGAAC 826 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 686 AATTTTTGCAGTATACTCACGCAGGTGATCCCGTTGACATCACATTTTCCTTGAAGGAAC 745 Query 827 TAAAGGCATTTCTTGCATTCTGCGAGGGCTGTGAAGCCGATATTCATCtttttttCGAAA 886 ||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 746 TAAAGGCATTTCTGGCATTTTGTGAGGGCTGTGAAGCTGATATTCATCTTTTTTTCGAAA 805 Query 887 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 806 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 865 Query 947 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 866 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 925 Query 1007 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 985 Query 1067 CACGGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGAGCACCCATCTGATCACACACGAG 1126 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 986 CACAGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGTGCACCCATCTGATCACACACGAG 1045 Query 1127 TATGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1186 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 TTTGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1105 Query 1187 AGGCTCAGGGACAACCAGACTTGGATATCCATAGAATTAGGAATATGGAAATATCAAAAG 1246 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1106 AGGCTCAGGGACAACCAGACTTGGATATCCAAAGAATTAGGAATATGGAAATATCAAAAG 1165 Query 1247 GCGGGCCAGTTGGAGATACTGCTCCTGCAGCTCCTCCTAAGTCCCAACGTCCCACACAGA 1306 ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1166 GCGGGCCAGCTGGAGATACTGCTCCTGCAGCTCCT---AACTCCCAACGTCCCACACAGA 1222 Query 1307 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1223 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1282 Query 1367 CTAGTAATTGGGTGGATGCAAATGAGGAAGAAGAAGATGACGACGAAGGTGTCGAGGCGA 1426 ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 1283 CTAGTAATTGGGTAGATGCAAATGAGGAAGAAGACGACGACGAAGAAGGTGTCGAGGCGA 1342 Query 1427 CACCACCTCACAATGAAGATTATTAA 1452 | |||||||||||||||||||||||| Sbjct 1343 CGCCACCTCACAATGAAGATTATTAA 1368 Score = 604 bits (327), Expect = 4e-172 Identities = 367/386 (95%), Gaps = 4/386 (1%) Strand=Plus/Plus Query 33 aaggtttaaattaaaatttgaatttatttttCT--CCAGAGACAGAGAGAGATGGAGTTG 90 ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1 AAGGTTTAAATCAAAATTTGAATTTATTTTTCTAGAGAGAGAGAGAGAGAGATGGAGTTC 60 Query 91 AGTATCAGTGGCAATGCGCTCAAGACC-TTGTCTAGGTCTATAATCTGCCTCGCACGCGT 149 |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| Sbjct 61 AGTATCAGTGGCAATGGGCTCAAGACCTTTG-CTAGGTCTATAATCTGCCTCGCACGCGT 119 Query 150 CGGTAACGAGCTCGTTGTCCAAGCTTCGCCGACACAGCTGGCATTGCACACTTTGAATGC 209 ||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||| Sbjct 120 CGGCAACGAGCTCGTCGTCCAAGCTTCGCCGACGCGGCTGGCATTGCACACTTTAAATGC 179 Query 210 TTCACGTTCTGCCTATCAGTGTATCACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 269 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 TTCACGTTCTGCCTATCAATGTATTACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 239 Query 270 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 299 Query 330 CCCTCTCGCGAGCATTGATCATATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 389 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 300 CCCTCTCGCCAGCATTGATCACATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 359 Query 390 CAAATGGACTTTGCAGTGTTACAGTG 415 |||||||||||||||||||||||||| Sbjct 360 CAAATGGACTTTGCAGTGTTACAGTG 385 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58163804115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5