BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05490.1

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477838 jgi|Araly1|477838|fgenesh2_kg.3__539__AT3G05490.1          717    0.0  


> Ahg477838 jgi|Araly1|477838|fgenesh2_kg.3__539__AT3G05490.1
Length=548

 Score =  717 bits (388),  Expect = 0.0
 Identities = 424/441 (96%), Gaps = 3/441 (1%)
 Strand=Plus/Plus

Query  68   GAAGACTCTGATTCACCGAGAAGGTTTTGGCTTAAAGATGACGAACACTCGCGCGATCTA  127
            ||||||||||||||||||||||||||| | |||||||||   ||||||||||||||||||
Sbjct  28   GAAGACTCTGATTCACCGAGAAGGTTTCGCCTTAAAGAT---GAACACTCGCGCGATCTA  84

Query  128  CGCCGTCATCGCGATCCTGGCGATAGTAATCTCAGCCGTGGAATCAACCGGAGACTTCGG  187
            |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct  85   CGCCGTCATCGCGATCCTGGCGATCGTAATCTCAGCCGTCGAATCAACCGGCGACTTCGG  144

Query  188  AGATTCGCTAGATTTCGTGAGAGCCGGATCTTCATCGCTCTTCTCTGGATGCACAGGATC  247
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  145  AGATTCGCTAGATTTCGTGAGAACCGGATCTTCATCGCTCTTCTCTGGATGCACAGGATC  204

Query  248  GATCGCAGAGTGTATAGCGGAAGAAGAAGAGATGGAGTTCGATTCAGACATAAGCCGGCG  307
            |||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct  205  GATCGCTGAGTGTATAGCCGAAGAAGAAGAGATGGAGTTCGATTCAGAAATCAGCCGGCG  264

Query  308  TATATTAGCACAGAAGAAGTACATTAGCTACGGTGCTATGAGGAGGAACAGTGTGCCTTG  367
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  GATATTAGCACAGAAGAAGTACATTAGCTACGGTGCTATGAGGAGGAACAGTGTGCCTTG  324

Query  368  TTCACGGCGTGGTGCGTCGTACTACAACTGCCAGCGTGGAGCTCAGGCGAATCCTTACAG  427
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  325  TTCACGCCGTGGTGCGTCGTACTACAACTGCCAGCGTGGAGCTCAGGCGAATCCCTACAG  384

Query  428  CCGTGGATGCAGCACCATCACTAGGTGCAGGCGTTGAAGAAGATGAGTCACTTGAatttc  487
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  385  CCGTGGATGCAGCACCATTACTAGGTGCAGGCGTTGAAGAAGATGAGTCACTTGAATTTC  444

Query  488  ctattttgcccctttcttttt  508
            |||||||||||||||||||||
Sbjct  445  CTATTTTGCCCCTTTCTTTTT  465


 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  1   GTTGTCTTCAGCTGTGTACAGAATCAAG  28
           ||||||||||||||||||||||||||||
Sbjct  1   GTTGTCTTCAGCTGTGTACAGAATCAAG  28



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25999829394


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5