BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05510.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317410 jgi|Araly1|317410|fgenesh1_pm.C_scaffold_3000426 2056 0.0
> Ahg317410 jgi|Araly1|317410|fgenesh1_pm.C_scaffold_3000426
Length=1386
Score = 2056 bits (1113), Expect = 0.0
Identities = 1267/1340 (95%), Gaps = 15/1340 (1%)
Strand=Plus/Plus
Query 183 ATGGGAATTCATTTTGTTGACAAGGCAGATCTATGGAAGAGTGCACTGTTGTTCAATCTT 242
||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGAATTCAATTCGTCGACAAGGCAGATCTATGGAAGAGTGCACTGTTGTTGAATCTT 60
Query 243 AAACTTCGTGATCGATTTCGAATCGCCGTCGATGATCACCGTGGTCGAGCTACGGTTTTC 302
|| ||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||
Sbjct 61 AAGCTTCGTGATCGATTTAGAATCGCCGTCGACGACCACCGTGGTCGAGCTGCGGTTTTC 120
Query 303 TCACCGGATGGTTGCTTCTCTTCCACTATCCACCGCTGGGTGACTC-GATTCCGGAACTT 361
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 121 TCACCGGATGGTTACTTCTCTTCCACTATCCACCGCTGGGTGACTCTG-TTCCGGAACTT 179
Query 362 TCGCCGGGAGTCTCTCCCTTCTCCACCGGCTTTTTATCGCAGACGAGTTTCTAAGGACTT 421
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 TCGCCGGGAGTCTCTCCCTTCTCCACCCGCTTTTTATCGCAGACGAGTTTCTAAAGACTT 239
Query 422 AACGGCAGAAGAAGAGTCTGCTCTTTTCCGGATGCTACAAACTGTGGCTGTTCCCCTTAT 481
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 240 AACGGCAGAAGAAGAGTCTGCTCTTTTCCGGATGCTTCAAGCTGTGGCTGTTCCCCTTAT 299
Query 482 TGGAAATGCTTGTCATGTTTTCATGAATGGTTTTAACCGTGTTCAGGTATATGGTTTAGA 541
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGGAAATGCTTGTCATGTTTTCATGAATGGTTTTAACCGTGTTCAGGTGTATGGTTTAGA 359
Query 542 GAAATTGCATGATGCTTTACTCAACAGACCAAAGAACAAGCCTCTTGTAACGGTGAGCAA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAATTGCATGATGCTTTACTCAACAGACCAAAGAACAAGCCTCTTGTAACGGTGAGCAA 419
Query 602 TCATGTTGCATCTGTGGATGATCCATTTGTCATTGCTTCATTACTTCCACCTAAATTTCT 661
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 420 TCATGTTGCATCTGTGGATGATCCATTTGTCATTGCTTCGTTACTTCCGCCTAAACTTCT 479
Query 662 ACTTGATGCCCGTAATTTGAGGTGGACGCTCTGTGCTACAGATAGATGCTTTAAAAACCC 721
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 ACTTGATGCCCGTAATTTGAGGTGGACGCTTTGTGCTACAGATAGATGCTTTAAAAACCC 539
Query 722 TGTAACTTCAGCTTTCTCTCGATCTGTCAAAGTTTTGCCAATTTCTCGTGGTGAAGGAAT 781
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 TGTAACTTCAGCTTTCTTTCGATCTGTCAAAGTTTTGCCAGTTTCTCGTGGTGAAGGAAT 599
Query 782 TTATCAGCAGGGAATGGACATTGCGATTTCGAAATTGAACAACGGAGGGTGGGTTCACAT 841
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 600 TTATCAGCAGGGAATGGACATTGCGATTTCGAAATTAAACAGCGGAGGGTGGGTTCACAT 659
Query 842 CTTTCCAGAAGGCAGTCGCTCCCGGGATGGTGGAAAGACTATGGGCTCAGCGAAGAGGGG 901
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 CTTTCCAGAAGGCAGTCGCTCCCGGGATGGTGGGAAGACTATGGGCTCAGCGAAGAGGGG 719
Query 902 TATCGGAAGGTTGATTTTGGACGCAGATACTCTCCCTATGGTTGTTCCTTTTGTGCATAC 961
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TATCGGAAGGTTGATTTTGGACGCAGATACTCTCCCTATGGTTGTTCCATTTGTGCATAC 779
Query 962 TGGTATGCAGGATATAATGCCAGTTGGAGCTAGTGTTCCACGGATTGGCAAGACAGTGAC 1021
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TGGTATGCAGGACATAATGCCAGTTGGAGCCAGTGTTCCACGGATTGGCAAGACAGTGAC 839
Query 1022 AGTGATCATTGGAGACCCTATTCATTTTAATGACATTCTCAGCACTGAAGGAGCCCAACA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 AGTGATCATTGGAGACCCTATTCATTTTAATGACATTCTCAGCACTGAAGGAGCCAAACA 899
Query 1082 CGTCTCAAGGAAACACCTGTATGACGCCGTTTCGTCCAGAATTGGACAAAGACTGTACGA 1141
|||||||||||||||| |||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 900 CGTCTCAAGGAAACACTTGTATGACGCAGTTTCGTCCAGAATTGGGCACAGACTGTATGA 959
Query 1142 TTTAAAAGCACAAGTTGATAGAGTATATATAGAACAACAATCTATGATGTCACACAATGC 1201
|||||||| |||||| ||||| |||| | |||||||||||||||||||||||||| | ||
Sbjct 960 TTTAAAAGTACAAGTCGATAGGGTATCTCTAGAACAACAATCTATGATGTCACACGACGC 1019
Query 1202 CAAAACACCCTCGGACCGTGCTGCTGAGATCTTTCATAGAGTCGATTGGGACTCATTTGG 1261
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 CAAAACATCCTCGGACCGTGCTGCTGAGATCTTCCATAGAGTCGATTGGGACTCATTTGG 1079
Query 1262 GATGGGAGCACAATTTTCAGAAGAATCATCACCCAGTAGTA--AACC-GATTGGCCAAAG 1318
|||||||||||| || ||||||||||||||| ||||||||| || | ||||| |||||
Sbjct 1080 GATGGGAGCACAGTTCTCAGAAGAATCATCAGCCAGTAGTATTAAACTGATTGCCCAAAC 1139
Query 1319 CGATGATCGCA-TTGTCAGATCTCCCAAAAGGAGAGTCTCACCCGAAGGAGGGGTCAGCT 1377
||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1140 CGATGATGGCAATT-TCAGATCTCCCAAAAGGAGAGTCTCATCCGAAGGAGGGATCAGCT 1198
Query 1378 TGAAGATTAAGAAGCTCATGGACTCAACCGAGATGATGGGGTTT-GCGGCTAGAGGGTTA 1436
|||||||||||||| |||||||||| || ||||||||||| ||| ||||||||||||||
Sbjct 1199 TGAAGATTAAGAAGTTCATGGACTCTACGGAGATGATGGG-TTTCGCGGCTAGAGGGTTG 1257
Query 1437 CTAATGAACGAGTACAAGAGTCGGGTTGAATCTGCCAATGTTGGT-A-----GGCCTTTA 1490
| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 1258 TTTATGAACGAGTACAAGAGTCGGGGTGAATCTGCCAATGTTGGTCAAATCCGGCCTTTA 1317
Query 1491 AAGGCTTGGAGAGAGTATTT 1510
||||||||||||||||||||
Sbjct 1318 AAGGCTTGGAGAGAGTATTT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5