BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05520.2
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477841 jgi|Araly1|477841|fgenesh2_kg.3__542__AT3G05520.1 1583 0.0
> Ahg477841 jgi|Araly1|477841|fgenesh2_kg.3__542__AT3G05520.1
Length=1010
Score = 1583 bits (857), Expect = 0.0
Identities = 945/986 (96%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 14 TATCGACGGCGACAATTTCTCTCTCCGGCTAACTTTTTTC-T--AGA-G--A-A---AGC 63
||||||||||||||||||||||||||||| ||||||| || | ||| | | | |||
Sbjct 1 TATCGACGGCGACAATTTCTCTCTCCGGCAAACTTTTATCATAGAGAGGTTAGAGGCAGC 60
Query 64 TATGGCGGACGAAGAAGATGAGTTACTGGAGACAGAACTAAGTTACGACCAGAAAAAGGA 123
|||||||| |||||||| ||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 61 CATGGCGGATGAAGAAGACGAGTTACCGGAGACAGAGCTAAGTTACGACCAGAAGAAGGA 120
Query 124 AATCGCCAAGTGGTTTTTCCTCAACGCTCCCGCTGGAGAAATCAATTACGTCGCTAAAGA 183
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AATCGCAAAGTGGTTTCTCCTCAACGCTCCCGCCGGAGAAATCAATTACGTCGCTAAAGA 180
Query 184 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTGTACAATGAAGCAGCCATGGAAGCATTTCC 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTCTACAATGAAGCAGCCATGGAAGCATTTCC 240
Query 244 AGTGTACAACAAAACTCACATGATTTGCCTTGAAATGCCCAGT-GGAGCTGGTGATGTGA 302
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 241 AGTGTACAACAAATCTCACATGATTTGCCTTGAAATGCCCAGTAGG-GCTGGTGATGTGA 299
Query 303 TTGTCTCATCTTACAGTGAAATTAATGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 362
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TTGTCTCAGCTTACAGTGAAATTACTGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 359
Query 363 TTGCCATAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCCGTAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 419
Query 423 AACTTCCTTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 482
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTTCCGTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 479
Query 483 ATGTTAGTGAATCTTATCCGAAAGGTATGTCTGCAGTTAATTGTGTGAAAGGGAAAGATA 542
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 480 ATGTTAGTGAATCTTATCCGAAAGGTATGTGTGCAGTTAATTGTGTGAAGGGGAAAGATA 539
Query 543 ATGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCTATGAGACTTAGTC 602
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 CTGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCCATGAGACTTAGTC 599
Query 603 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACATAGATTTCCAGGATGAAT 662
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACGTAGATTTCCAGGATGAAT 659
Query 663 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 719
Query 723 ATGTGGAATTAGATGCaaaaaaaGATTTCCAAGATTCAACAATATTTCAGTCTGCAGATG 782
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 720 ATGTGGAATTAGATGCAAAAAAAGATTTTCAAGATTCAACAATATTTCAGTCTGCGGATG 779
Query 783 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 839
Query 843 TAGAGGTAGCTTATTCAAAATTACCGGATAACACTTTCAAGGATTTGAGGAGGAAACTTC 902
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 TGGAGGTAGCTTATTCAAAATTACCGGATAACACTTTTAAGGATTTGAGGAGGAAACTTC 899
Query 903 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTAACAAGAGAGG 962
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTTACAAGAGAGG 959
Query 963 TCGAGAAAGAACTTGGACTTGGCAAG 988
| ||||||||||||||||| ||||||
Sbjct 960 TGGAGAAAGAACTTGGACTAGGCAAG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5