BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05530.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928150 jgi|Araly1|928150|scaffold_300607.1 2263 0.0
Ahg311956 jgi|Araly1|311956|fgenesh1_pm.C_scaffold_1000736 752 0.0
> Ahg928150 jgi|Araly1|928150|scaffold_300607.1
Length=1367
Score = 2263 bits (1225), Expect = 0.0
Identities = 1321/1368 (97%), Gaps = 3/1368 (0%)
Strand=Plus/Plus
Query 73 CTTTGAGAAATCCCTAACTCTTTGCTCTTCTCTTCCCGGCGATCTATCTCTCCGATTTGG 132
|||||||||| ||||||||| |||||| |||||||| |||||||| ||||||||||||||
Sbjct 1 CTTTGAGAAACCCCTAACTC-TTGCTCCTCTCTTCCTGGCGATCTCTCTCTCCGATTTGG 59
Query 133 GTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTG 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTCG 119
Query 193 CTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAA 252
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 120 CTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTCCTCGATAACGAGATTCGAA 179
Query 253 TTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTA 312
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTCTCAAGGAAGACGCACAGAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATAA 239
Query 313 AGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTG 299
Query 373 TCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATC 432
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGAGATTTTGGAGATGAATCCTGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATC 359
Query 433 TTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCT 492
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGACTCTCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCT 419
Query 493 TTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAG 552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTACCAGTGGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAG 479
Query 553 TTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTA 612
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTAATAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTA 539
Query 613 AAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGA 672
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATCGGAGGACTAGAGA 599
Query 673 AGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTG 732
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 600 AGCAGATCCAAGAGCTTGTTGAGGCAATTGTGCTTCCAATGACACACAAGGAACGTTTTG 659
Query 733 AGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTA 792
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 660 AGAAGCTGGGTGTTCGTCCACCAAAGGGGGTGCTCTTATATGGTCCTCCAGGGACTGGTA 719
Query 793 AAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAG 852
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAACTTTGATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAG 779
Query 853 GCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTC 912
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 GCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGCGATGCCTTTC 839
Query 913 AACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 AACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATCGGTA 899
Query 973 CAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGT 1032
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 900 CAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAGGTGCAGAGAACTATGTTGGAGT 959
Query 1033 TGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTA 1092
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 960 TGCTCAATCAACTTGATGGATTCAGCAGCGATGAACGTATTAAGGTGATTGCAGCCACTA 1019
Query 1093 ACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTG 1152
|||||||||||||||| || ||||||||||||||||||||| || |||||||||||||||
Sbjct 1020 ACCGTGCAGATATTCTAGATCCAGCACTCATGCGTTCTGGTAGACTAGACAGAAAGATTG 1079
Query 1153 AGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGA 1212
||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1080 AGTTCCCGCACCCAACTGAAGAAGCCAGAGCCAGAATCTTGCAGATTCACTCAAGGAAGA 1139
Query 1213 TGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATG 1272
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 TGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCAAGATCAACAGATGATTTCAATG 1199
Query 1273 GAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCA 1332
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1200 GAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGCTAGCGCTTCGCCGTGATGCCA 1259
Query 1333 CAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAG 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAG 1319
Query 1393 CAAGCTTGAACTACTACGCCTGAtctctctctctcATCATTTATTTTT 1440
|||||||||||||||| |||||||| | |||| ||||||||||| |||
Sbjct 1320 CAAGCTTGAACTACTATGCCTGATC-C-CTCTGTCATCATTTATATTT 1365
> Ahg311956 jgi|Araly1|311956|fgenesh1_pm.C_scaffold_1000736
Length=1221
Score = 752 bits (407), Expect = 0.0
Identities = 877/1099 (80%), Gaps = 51/1099 (5%)
Strand=Plus/Plus
Query 327 AAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATT-TTGGA 385
|||||||| || ||||| ||||| |||||||| || ||||| || || |||||| || ||
Sbjct 160 AAGATTAAGCTAAACAAACAGCTTCCTTACTTAGTCGGCAATATCGTTGAGATTCTT-GA 218
Query 386 GATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCA-AC 444
||||| |||||| |||||||| |||||| |||| || ||||| ||||| ||||| || |
Sbjct 219 GATGAGTCCAGAGGATGATGCAGAGGAATATGGAGCGAATATCGATCTGGACTCTCAGA- 277
Query 445 GGAAAGGAAAATGTGTTG-TGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTT 503
|||| |||||||| || | | || ||||| || || || |||||||||||||| || |||
Sbjct 278 GGAAGGGAAAATGCGTCGTTCTT-AAAACATCAACTCGCCAGACCATCTTTCTCCCCGTT 336
Query 504 GTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGAT 563
|||||||| || ||||| |||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 337 GTTGGACTTGTTGATCCGGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGAT 396
Query 564 AGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAG 623
|||||||||||| ||||||| ||||| || || ||||| || || || ||||| ||||||
Sbjct 397 AGCTACTTGATTCTGGATACTTTGCCGTCTGAATATGATTCAAGAGTAAAAGCAATGGAG 456
Query 624 GTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAA 683
|| || |||||||| |||||||| |||||||| || || ||||||||||||||| | ||
Sbjct 457 GTTGACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAGAAGCAGG-CTAA 515
Query 684 GAGCTTGTAGAGGCAATTGTGCTTCCCA-TGACGCACAAGGAAC-GTTTTGAGAAGCTGG 741
| ||||| || || |||||| || ||| |||| || || || | ||| || ||| |||
Sbjct 516 -A-CTTGTTGAAGCCATTGTG-TTGCCAATGACTCATAAAGAGCAGTTC-GAAAAGTTGG 571
Query 742 GTGTTCGTCCACC-AAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAA-ACTTT 799
|| | || ||||| ||||| || |||||||||||||| || || || || ||| || ||
Sbjct 572 GTATCCGGCCACCTAAAGGT-GTACTCTTGTATGGTCCTCCTGGAACCGG-AAAGACGTT 629
Query 800 AATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCA 859
||||| || || || ||||||||||| ||||| || ||||| ||| | ||||| || ||
Sbjct 630 GATGGCCCGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTGAAACTAGCAGGGCCACA 689
Query 860 ATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAA-CTTG 918
| | | | ||||||||||||| |||||||| |||||||||||||| |||| ||||
Sbjct 690 ACT--T--A--TGTTCATTGGAGATGGAGCAAAACTTGTCCGTGATGC-TTTCCTGCTTG 742
Query 919 CCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGC 978
| ||||||||| | || || ||||| |||||||| || || || || ||||| |||||||
Sbjct 743 CAAAAGAGAAATCCCCTTGTATTATATTCATAGACGAGATTGACGCAATTGGGACAAAGC 802
Query 979 GTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCA 1038
|||| || || ||||| || |||||| | || ||||| ||||| ||||||||| ||||||
Sbjct 803 GTTTTGATAGCGAAGTTAGTGGAGACCGTGAGGTGCAAAGGACAATGTTGGAGCTGCTCA 862
Query 1039 ATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTG 1098
| || || || |||||||| |||||||| || || ||||| |||||||| || || ||||
Sbjct 863 ACCAGCTGGATGGATTCAGCAGCGATGATCGCATCAAGGTTATTGCAGCGACAAATCGTG 922
Query 1099 CAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGA-CAG-AAAGATTGAGTT 1156
| ||||| || || || || || |||||||||||||| || || | | ||| || | |
Sbjct 923 CTGATATACTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATC-GTAAA-ATCG-G-- 977
Query 1157 CCCACACCCAACCGAAGAAGCGAGAG-CAAGAATCTTGCAGATTCACTCAAGGAAGATGA 1215
| || |||| | |||||||| |||| || || |||| | || |||| ||||
Sbjct 978 C--AC-CCCA-CTGAAGAAGCTAGAGGCAGGA-TCTT--A----CA-----GGAAAATGA 1021
Query 1216 ATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAG 1275
|||| | |||||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1022 ATGTGAATGCAGACGTCAATTTTGAAGAGCTTGCTCGATCAACGGATGATTTCAATGGAG 1081
Query 1276 CTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATG-TTAGCTCTTCGCCGTGATGCCACA 1334
|||| || |||||||||||||| || || || || || || || ||||| ||||| ||
Sbjct 1082 CTCAACTCAAAGCAGTGTGTGTTGAAGCGGGTGTGCTT-GCCCTGCGCCGGGATGCAACT 1140
Query 1335 GAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCA 1394
|||||||||||||| || |||||||||||||| || ||||| || |||||||||||||||
Sbjct 1141 GAGGTGAACCATGAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCA 1200
Query 1395 AGCTTGAACTACTACGCCT 1413
||||| || ||||||||||
Sbjct 1201 AGCTTAAATTACTACGCCT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5