BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05540.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903398 jgi|Araly1|903398|Al_scaffold_0003_526                     558    1e-158
  Ahg934084 jgi|Araly1|934084|scaffold_402072.1                        193    1e-48 


> Ahg903398 jgi|Araly1|903398|Al_scaffold_0003_526
Length=471

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 342/362 (94%), Gaps = 0/362 (0%)
 Strand=Plus/Plus

Query  146  CGGGTGAGGAAGGGGGTGAAGACGAAGGAGTCGATGATCAAGCTGTGAAGGTTGTCGATA  205
            ||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct  110  CGGCTGAAGAAGGCGGTGAAGATGAAGGAGTAGATGATCAAGCTGTGAAGGTTGTTGACA  169

Query  206  TCATCGATACGTTTAGGCTTCAGGAGCAACCATCGTTTGACAAGAAACAATTTGTGATGT  265
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  TCATAGATACGTTTAGGCTTCAGGAGCAACCATCGTTTGACAAGAAACAATTTGTGATGT  229

Query  266  TTATGAAAAGATACATCAAGCAACTAAGCCCTAAGTTGGACTCAGAAAACCAAGAGCTGT  325
            | |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  230  TCATGAAAAGATACATAAAGCAACTAAGCCCTAAGTTGGACTCGGAAAAGCAAGAGCTGT  289

Query  326  TCAAGAAACACATTGAGAGTGCCACCAAATTCTTGATGTCAAAGCTCAAAGACTTCCAAT  385
            | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  290  TTAAGAAACACATTGAGAGTGCCACTAAGTTCTTGATGTCAAAGCTCAAAGACTTCCAAT  349

Query  386  TCTTCGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTACAGAG  445
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  TCTTTGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTACAGAG  409

Query  446  AAGGAGCCACTGATCCTACTTTTCTCTACTTGGCCTACGGCTTGAAAGAGATCAAGTGCT  505
            |||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  410  AAGGAGCCGCTGATCCTACTTTCCTCTACTTAGCCTACGGCTTGAAGGAGATCAAGTGCT  469

Query  506  GA  507
            ||
Sbjct  470  GA  471


 Score =  183 bits (99),  Expect = 8e-46
 Identities = 101/102 (99%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGGTCTACCAGGATATTCTTACAGGCGATGAGCTTCTCTCTGATTCCTTTCCTTAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTGGTCTACCAGGATATTCTTACAGGCGATGAGCTTCTCTCTGATTCCTTTCCTTAC  60

Query  61   AAGGAAATCGAGAATGGCATGTTATGGGAAGTTGAAGGAAAG  102
            |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AAGGAAATCGAGAACGGCATGTTATGGGAAGTTGAAGGAAAG  102


> Ahg934084 jgi|Araly1|934084|scaffold_402072.1
Length=368

 Score =  193 bits (104),  Expect = 1e-48
 Identities = 119/126 (94%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  382  CAATTCTTCGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTAC  441
            ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  225  CAATT-TT-GTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTGGCTTACTAC  282

Query  442  AGAGAAGGAGCCACTGATCCTACTTTTCTCTACTTGGCCTACGGCTTGAAAGAGATCAAG  501
            |||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  283  AGAGAAGCTGCCACTAATCCTACTTTTCTCTACTTAGCCTACGGCTTGAAAGAGATCAAG  342

Query  502  TGCTGA  507
            ||||||
Sbjct  343  TGCTGA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5