BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05545.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477844 jgi|Araly1|477844|fgenesh2_kg.3__545__AT3G05545.1 2904 0.0
> Ahg477844 jgi|Araly1|477844|fgenesh2_kg.3__545__AT3G05545.1
Length=1859
Score = 2904 bits (1572), Expect = 0.0
Identities = 1772/1863 (95%), Gaps = 35/1863 (2%)
Strand=Plus/Plus
Query 22 ttttCTTCTTCCTGGGTCTCTCTCT-G-GTGGTGACGATCGAAGAGAGTTCACGGATTCG 79
|||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 11 TTTT-TT-TTCCTGGGTCTCTCTCTGGTGTGGTGACGATCGAAGAGAGTTCACGGATTCA 68
Query 80 TACAAGGATTAAATTAATTATTCTGGTAAATTAATCGAAGCGTAAGGAATTGGGGAGAGT 139
|| |||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 69 TAGTAGGATTAAATAAATCATTCTGGTAATTTAATCGAAGCGTAAGGAATTCGGGAGAGT 128
Query 140 GATTTTTCTGGGTTCGAA-TTTGGTGGTTGATTCaaaaaaaaaaaaGGGTTTTGAGATTT 198
|| |||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 129 GA-TTTT-TGGGTTCGAATTTTTGTGGTTGATTCAAAAAAAAAGAAGGGTTTTGAGATTT 186
Query 199 GGGTTATTTTGATTTCGAATTTTGGTTATGGGTTTAGGCAATAAGGGTAACAAATTCAAT 258
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 187 GGGTTGTTTTGATTTCG-ATTTTGGTTATGGGTTTAGGTAATAAGGGTAACAAATTCAAT 245
Query 259 TTCGGCGATAATGATCTCGCCGACGAAGCTAGTGGTGCCGAT---G------GCGACGAA 309
|||||||||||||||||||||||||||| ||||| ||||||| | ||||||||
Sbjct 246 TTCGGCGATAATGATCTCGCCGACGAAGGTAGTGCTGCCGATGGCGATTCTCGCGACGAA 305
Query 310 GGTGATGGTTTTGGTTCGGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 369
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GGTGATGGTTTTGGTTCTGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 365
Query 370 GATCGAGCATGGGCTAATCTTCAATGTGACCATCAGTTCCATCTAGATTGTATTGGTTCG 429
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 366 GATCGAGCTTGGGCTAATCTTCAATGTGACCATCAGTTCCATCTTGATTGTATTGGTTCT 425
Query 430 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 485
Query 490 TGGCTTTATGCAAACGGTTGTCGTTCATATCCCGAATTCAATGTCGAGGATTGGGTTCAC 549
|||||||||||||| ||||| ||| ||||||| ||||||| |||||||||||||||||||
Sbjct 486 TGGCTTTATGCAAATGGTTGCCGTACATATCCTGAATTCAGTGTCGAGGATTGGGTTCAC 545
Query 550 GAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGTCTTTTGGAGTTCACTGGTGC 609
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 546 GAAGAAGATATTTATGATATTGGAGCATACTCTGAATTGTCTTTTGGAGTTCACTGGTGC 605
Query 610 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCACCGAGTTCA 669
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 606 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCGCCGAGTTCA 665
Query 670 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACTGCAGGT 725
Query 730 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTCGCCTTCCTCAAGCAGTGGT 789
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 726 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCATTCGTCTTCCTCAAGCAGTGGT 785
Query 790 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 845
Query 850 GTTTCTGGTGAAGTCCCAACTCCTTATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 909
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 846 GTTTCTGGTGAAGTCCCAACTCCATATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 905
Query 910 GATTATCATCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCGCTCATGTG 969
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 906 GATTATCACCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCCCTCATGTG 965
Query 970 GGCAGTCCAACTCAGCCCACGCCTCCACCAGCCGCTGCGAGGACTTCTCGAGCCAACGGC 1029
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GGTAGTCCAACTCAGCCCACGCCTCCACCAGCTGCTGCGAGGACTTCTCGAGCCAACGGT 1025
Query 1030 TCAGATATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1089
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCAGATGTGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1085
Query 1090 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1145
Query 1150 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCCTATTACCAACAGTCTTCTGCA 1209
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1146 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCGTATTACCAACAGTCTTCTGCA 1205
Query 1210 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGGCCTGTATTCCCATCTGGCCGG 1269
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1206 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGACCTGTATTCCCGTCTGGCCGG 1265
Query 1270 AGGCCCGCTAGAGGAATAGCTTCAGGGATGGGATCAACGTCATCTTCTTCAGATCAGGCA 1329
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1266 AGGCCCGCTAGAGGAATAGCTTCCGGGATGGGATCAACATCATCTTCTTCGGATCAGGCA 1325
Query 1330 GGTGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1389
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GGCGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1385
Query 1390 CAAGCCTACTCGGTTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAT 1449
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CAAGCCTACTCGATTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAC 1445
Query 1450 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCTTAAGAACTG 1509
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1446 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCGTAAGAACTG 1505
Query 1510 AGTCAGTACCCGTTCGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACa-aaa--aa 1566
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1506 AGTCAGTACCCGT-CGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACACAAATCAA 1564
Query 1567 ccaaa-aaaagaaaaaaaaaaCATTGGGAATTTGATATTTGAGAAAACCTGAAAAACTGC 1625
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1565 AAAAAGAAAAAAAAAAAAAAACATTGGGAATTTGATATTTGAGAAAACCTGAAAA-CTGC 1623
Query 1626 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1683
Query 1686 GAGAGAGACTGCCTCCCCCA-GTCGGTGGTGTGACCCCCGTGCGGTTCGAGGTCTGGGTA 1744
||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
Sbjct 1684 GAGAGAGACTGCCTCCCCCGCGTTGGTGGTGTGACC---GTGCGGTTCGAGGTCTGGTT- 1739
Query 1745 TGAATCGGGGGAGCGAAAGAGGTCTTTGGGTATTTGTTTTTTAATGTGGCGACATTGGGT 1804
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1740 TGAATCGGGGGAGCGAAAGAGGTCGTTGGGTATTTGTTTTTTAATGTGGCGACAATGGGT 1799
Query 1805 ATCCAAGTTAT----TACCCTAATGAAACTTTCTTTCTTCTATCTGGTTATGTTAAATTT 1860
||| |||| || ||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 1800 ATCAAAGTGATGAAGTACCCTAATGAAACTTT-TTTC--CTATCTGGTTTTGTTAAATTC 1856
Query 1861 TAA 1863
|||
Sbjct 1857 TAA 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5