BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05550.1
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903400 jgi|Araly1|903400|Al_scaffold_0003_528 472 8e-133
> Ahg903400 jgi|Araly1|903400|Al_scaffold_0003_528
Length=294
Score = 472 bits (255), Expect = 8e-133
Identities = 281/294 (96%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAATCAAAGACCAAATTTGAAGAAATCAGAAAATGGGTCTCCGATCACAAACTT 60
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGGAATCAAAGATCAAATTTGAAGAAATCAGAAAATGGGTCTCCGATCACAAGCTT 60
Query 61 CGTACCGTCGGTTGTTTATGGCTAAGTGGTATTACCGGTTCTATCGCCTATAACTGGTCC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTACCGTCGGTTGTTTATGGCTCAGTGGTATTACCGGTTCTATCGCCTATAACTGGTCC 120
Query 121 CAACCTGCCATGAAAACCAGTGTCAAGATCATCCACGCCAGGTTGCACGCTCAGGCGCTG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CAACCTGCCATGAAAACCAGTGTCAAGATCATCCACGCCAGGTTGCATGCTCAGGCGCTG 180
Query 181 ACTTTAGCTGCTTTGGCTGGAGCAGCCGTGGTGGAGTACTATGACCACAAAACTGAAGCT 240
|||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 181 ACTTTAGCTGCTTTGGCTGGAGCAGCGGTTGTGGAGTATTACGACCACAAAACTGAAGCT 240
Query 241 ACCAACCGCTATCCGAAGTTTCTGCCACCGGAAAATTTATCTCACAAAGACTAA 294
|||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 241 ACCAACCGCTATCCCAAATTTCTGCCGCCGGAAAATTTGTCTCACAAAGACTAA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10302009030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5