BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05560.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928154 jgi|Araly1|928154|scaffold_300611.1 704 0.0
Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1 453 8e-127
> Ahg928154 jgi|Araly1|928154|scaffold_300611.1
Length=435
Score = 704 bits (381), Expect = 0.0
Identities = 415/432 (96%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 90 AGAGAAGTCTTGGGAAAATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGG 149
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 4 AGAGAAGGCTTGGAAAAATGAGTCGAGGAAGTGCAGCTGTTGCCAAGGGAAAGAAGAAGG 63
Query 150 GAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTT 209
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 64 GAGTTTCCTTCACCATTGATTGTTCGAAGCCTGTTGATGACAAGATCATGGAGATTGCTT 123
Query 210 CCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTG 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 124 CCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTCGGTG 183
Query 270 ATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCT 329
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 184 ATTCTGTCACAATCACCCGTGAGAAGAGCAAGATCACTGTTACTTCAGATGGCCAATTCT 243
Query 330 CCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATT 389
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 244 CCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTCAAGAAGCACAATGTGAGGGATT 303
Query 390 GGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACA 449
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGCTTAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACA 363
Query 450 TTGCTGAGAACGAAGGAGAGGAGGAAGACTAAACCTCAGAATCCAGTTTGGTTTAGAAGT 509
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 364 TTGCTGAGAACGAGGGAGAGGAGGAAGACTAAACCTCAGAAACCAGTTTGGTTTAGAACT 423
Query 510 ATACTCTATTCC 521
|| |||||||||
Sbjct 424 ATGCTCTATTCC 435
> Ahg489552 jgi|Araly1|489552|fgenesh2_kg.6__2686__AT5G27770.1
Length=531
Score = 453 bits (245), Expect = 8e-127
Identities = 338/383 (88%), Gaps = 6/383 (2%)
Strand=Plus/Plus
Query 103 GAAAATGAGTCGTGG-AGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCA 161
||||||||||||||| | ||||| | | ||||||||||||||||||||||||||||
Sbjct 24 GAAAATGAGTCGTGGTA-ACGCAGCAGCAACTAAGGGAAAGAAGAAGGGAGTTTCCTTCA 82
Query 162 CCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAAG 220
| || |||||||| |||||||| ||||| ||||| ||||||||||||| | || ||||||
Sbjct 83 CTATCGATTGTTCGAAGCCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAAG 141
Query 221 TTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACA 280
||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 142 TTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTCC 201
Query 281 ATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTAT 340
||||| ||||| ||||||||||| ||||||||| | ||||| |||||||||||||| ||
Sbjct 202 ATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGATGGTCAATTCTCCAAGAGATA- 260
Query 341 TTG-AAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGT 399
| | ||||||||||||||||||||| |||||||||| || || |||||||||||||||||
Sbjct 261 TCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAACGTGAGGGATTGGCTCAGAGT 320
Query 400 GATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAA 459
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 321 GATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGAA 380
Query 460 CGAAGGAGAGGAGGAAGACTAAA 482
||||| |||||| ||||| ||||
Sbjct 381 CGAAGCAGAGGAAGAAGATTAAA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5