BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05570.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928155 jgi|Araly1|928155|scaffold_300612.1 363 9e-100
> Ahg928155 jgi|Araly1|928155|scaffold_300612.1
Length=266
Score = 363 bits (196), Expect = 9e-100
Identities = 246/270 (91%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 91 GAAAACCCGCCAAAACCGGCCACGTCTTCATGTCGAAAGAAGACAAAGGATGATGCCAAT 150
|||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACCCCGCCAAAACCAGCCATGTCTTCATGTCGAAAGAAGACAAAGGATGATGCCAAT 60
Query 151 TTCCTAGAAGACGTCAAGGATCACATCGATGATTTCATTAATGCTTCCATGGATGATCAC 210
||||| |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||
Sbjct 61 TTCCTTGAAGACGTCAAGGATCACATTGATGAATTCATGAGTGCTTCCATGGATGATCAC 120
Query 211 AAGAACTGTTTCAACAAAACCATCAAGAAGATGTTTGGGTTGTCAAAGGCTGTTGCGGAT 270
||||| ||||||||||| ||||| || ||||||||||| || |||||||||||||||||
Sbjct 121 AAGAATTGTTTCAACAAGACCATAAAAAAGATGTTTGGATTATCAAAGGCTGTTGCGGAG 180
Query 271 AAGCAGCAAAGTGAGGCTAAAGGAGGAGTCGAGAGTTATTTGCCTCTTCAGACAACAGTC 330
|||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 181 AAGCAGCAAACTGAGGCTAAAGGAG---TCGAGAGTTATTTGCCACTTCAGACAACAGTC 237
Query 331 TCAGATTAGAGAAACTGATGATAGAATCAA 360
|| || ||||||||||||| | ||||||||
Sbjct 238 TCGGACTAGAGAAACTGAT-AGAGAATCAA 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18238371542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5