BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05580.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928157 jgi|Araly1|928157|scaffold_300614.1 1631 0.0
Ahg489548 jgi|Araly1|489548|fgenesh2_kg.6__2682__AT5G27840.1 1194 0.0
> Ahg928157 jgi|Araly1|928157|scaffold_300614.1
Length=994
Score = 1631 bits (883), Expect = 0.0
Identities = 958/995 (96%), Gaps = 2/995 (0%)
Strand=Plus/Plus
Query 254 TTGGGATCAGAGGAAGAATGATGACGAGTATGGAAGGGATGATGGAGATGGGTGTATTGG 313
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1 TTGGGATCAGAGGAAGAGTGATGACGACTATGGAAGGGATGATGGAGATGGGTGTGTTGG 60
Query 314 ATGATATTATAAGGAGATTGTTGGAAGGTAAAGGAGGTAAACAGGTTCAGCTTTCGGAGG 373
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATGATATTATTAGGAGATTGTTGGAAGGTAAAGGAGGGAAACAGGTTCAGCTTTCGGAGA 120
Query 374 TCGAGATCCGTCAACTTTGCGTTAACGCCAGACAAATCTTCCTTTCTCAGCCTAATCTTC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAGATCCGTCAACTTTGCGTTAACGCCAGACAAATCTTCCTTTCTCAGCCTAATCTTC 180
Query 434 TCGAGCTTCATGCCCCCATTCGCATCTGCGGTGATATCCATGGACAGTACCAAGATCTTC 493
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TCGAGCTTCATGCCCCCATTCGCATCTGTGGTGATATCCATGGACAGTACCAAGATCTTC 240
Query 494 TGAGGCTATTCGAATACGGAGGCTATCCTCCTTCAGCGAACTATCTCTTCCTCGGCGATT 553
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 TGAGGCTATTTGAATACGGAGGCTATCCTCCTTCAGCTAACTATCTCTTCCTCGGTGATT 300
Query 554 ACGTTGATAGAGGCAAGCAAAGTCTTGAAACAATATGTTTACTCTTGGCTTACAAAATCC 613
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ACGTTGATAGAGGCAAGCAAAGTCTTGAAACAATATGTTTACTCTTGGCTTATAAAATCC 360
Query 614 GGTACCCATCCAAGATATTTCTCTTGAGAGGAAACCATGAAGATGCTAAGATCAACAGGA 673
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GGTACCCATCCAAGATATTTCTCTTGAGAGGAAACCATGAAGACGCTAAGATCAACAGGA 420
Query 674 TTTACGGGTTCTATGACGAATGCAAACGGAGGTTTAATGTACGGCTTTGGAAGATATTCA 733
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 421 TTTACGGGTTCTATGACGAATGCAAGCGGAGATTCAATGTACGGCTTTGGAAGATATTCA 480
Query 734 CCGATTGCTTCAACTGTTTGCCGGTAGCTGCTCTCATTGACGAGAAGATCCTATGTATGC 793
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CCGATTGCTTCAACTGTTTACCGGTAGCTGCTCTCATTGACGAGAAGATTCTATGTATGC 540
Query 794 ATGGTGGATTGTCACCGGAATTGGAAAACTTGGGGCAGATTCGGGAGATTCAAAGGCCTA 853
||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 541 ATGGTGGGTTGTCACCGGAATTGGAAAACTTGAGGCAGATTCGAAAGATCCAAAGGCCTA 600
Query 854 CAGAGATTCCAGACAATGGTCTTCTTTGTGATTTACTTTGGTCTGATCCTGATCAGAAGA 913
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 601 CGGAGATTCCAGACAATGGTCTTCTTTGTGATCTACTTTGGTCTGATCCTGATCAAAAGA 660
Query 914 ATGAAGGGTGGACTGATAGCGATCGAGGTATCTCCTGCACGTTTGGAGCCGATGTAGTCG 973
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGAAGGTTGGACTGATAGCGATCGAGGTATCTCCTGCACGTTTGGAGCCGATGTAGTCG 720
Query 974 CTGACTTTTTGGATAAGAATGATCTCGATCTCATTTGCAGAGGCCATCAGGTAGTGGAAG 1033
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CTGACTTTTTGGATAAGAATGATCTCGATCTCATTTGCCGAGGCCATCAGGTAGTGGAAG 780
Query 1034 ATGGGTATGAGTTTTTCGCAAAACGGAGGTTAGTCACAATATTCTCAGCTCCAAACTATG 1093
||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 781 ATGGGTACGAGTTTTTCGCAAAACGGAGATTAGTCACGATATTTTCAGCTCCAAACTATG 840
Query 1094 GAGGAGAGTTTGACAATGCCGGTGCATTATTGAGCGTGGATCAATCTCTCGTTTGCTCCT 1153
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 GTGGGGAGTTTGACAATGCCGGTGCATTATTGAGTGTGGATCAATCTCTCGTTTGCTCCT 900
Query 1154 TTGAGATTCTGAAACCGGCTCCAGCTTCTAGCA-CTAATCCTCTCAAGAAGGTACCGAAA 1212
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 901 TTGAGATTCTGAAACCGGCTCCAGCTTCTAGCAGC-AATCCTCTCAAGAAGGTACCGAAA 959
Query 1213 ATGGGGAAGTCTTGAAACTTAATACAGCTTATTCC 1247
|||||||||||||||||||||||| ||||||||||
Sbjct 960 ATGGGGAAGTCTTGAAACTTAATAAAGCTTATTCC 994
> Ahg489548 jgi|Araly1|489548|fgenesh2_kg.6__2682__AT5G27840.1
Length=1476
Score = 1194 bits (646), Expect = 0.0
Identities = 923/1055 (87%), Gaps = 26/1055 (2%)
Strand=Plus/Plus
Query 197 GACCCATTGTTTCTCGCCTGATT-TGGCGCAAA-CC------C--TTTTGGATTCTGGTG 246
|||||||| || |||||||| || ||||||||| || | ||||||||| |||||
Sbjct 118 GACCCATTATTCCTCGCCTGTTTCTGGCGCAAACCCTTGTATCAATTTTGGATTTTGGTG 177
Query 247 A-AAAAGGTT-GGGATC---AGAG---GAAGA--ATGATGACGAGTATGGAAGGGATGAT 296
| |||| || |||||| |||| ||| | |||||||||||||||||||||||| |
Sbjct 178 AGAAAAATTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGATGGT 237
Query 297 GGAGATGGGTGTATTGGATGATATTATAAGGAGATTGTTGGAAGGTAAAGGAGGTAAACA 356
||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 238 GGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAAACA 297
Query 357 GGTTCAGCTTTCGGAG-GTCGAGATCCGTCAACTTTGCGTTAACGC-CAGACAAATCTTC 414
|||||||||||| ||| | |||||| |||||||| ||| ||||||| | | |||||||||
Sbjct 298 GGTTCAGCTTTCCGAGAG-CGAGATTCGTCAACTCTGCTTTAACGCTC-GTCAAATCTTC 355
Query 415 CTTTCTCAGCCTAATCTTCTCGAGCTTCATGCCCCCATTCGCATCTGCGGTGATATCCAT 474
|| ||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||||||
Sbjct 356 CTCTCTCAACCTAATCTTCTCGATCTCCATGCCCCAATTCGTATCTGTGGTGATATCCAT 415
Query 475 GGACAGTACCAAGATCTTCTGAGGCTATTCGAATACGGAGGCTATCCTCCTTCAGCGAAC 534
|| ||||| ||||||||| ||||| |||| |||||||||||||||||||||||||| |||
Sbjct 416 GGCCAGTATCAAGATCTTTTGAGGTTATTTGAATACGGAGGCTATCCTCCTTCAGCAAAC 475
Query 535 TATCTCTTCCTCGGCGATTACGTTGATAGAGGCAAGCAAAGTCTTGAAACAATATGTTTA 594
||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 476 TATCTATTCCTTGGTGATTACGTTGACAGAGGCAAGCAAAGTCTTGAGACCATATGTTTG 535
Query 595 C-TCTTGGCTTACAAAATCCGGTACCCATCCAAGATATTTCTCTTGAGAGGAAACCATGA 653
| |||| |||||||| || ||||| || || ||||||| ||| |||||||| ||||||||
Sbjct 536 CTTCTT-GCTTACAAGATTCGGTATCCGTCGAAGATATATCTGTTGAGAGGGAACCATGA 594
Query 654 AGATGCTAAGATCAACAGGATTTACGGGTTCTATGACGAATGCAAACGGAGGTTTAATGT 713
|||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 595 GGATGCTAAGATCAATAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTTAATGT 654
Query 714 ACGGCTTTGGAAGATATTCACCGATTGCTTCAACTGTTTGCCGGTAGCTGCTCTCATTGA 773
||| ||||||||| | || || ||||||||||||||||| || |||||||| ||||||||
Sbjct 655 ACGACTTTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCCGTAGCTGCACTCATTGA 714
Query 774 CGAGAAGATCCTATGTATGCATGGTGGATTGTCACCGGAATTGGAAAACTTGGGGCAGAT 833
||||||||| || |||||||| ||||| |||||||| || ||||| || ||| |||||
Sbjct 715 CGAGAAGATACTGTGTATGCACGGTGGGTTGTCACCAGATTTGGACAATTTGAATCAGAT 774
Query 834 TCGGGAGATTCAAAGGCCTACAGAGATTCCAGACAATGGTCTTCTTTGTGATTTACTTTG 893
||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 TCGAGAGATTCAGCGGCCTACAGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 834
Query 894 GTCTGATCCTGATCAGAAGAATGAAGGGTGGACTGATAGCGATCGAGGTATCTCCTGCAC 953
||| |||||||||||||||| |||||||||| ||||||| |||||||||||||| |||||
Sbjct 835 GTCAGATCCTGATCAGAAGATTGAAGGGTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 894
Query 954 GTTTGGAGCCGATGTAGTCGCTGACTTTTTGGATAAGAATGATCTCGATCTCATTTGCAG 1013
|||||||||||| ||||||||| || ||||||||||||||||| || ||||||||| |
Sbjct 895 TTTTGGAGCCGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 954
Query 1014 AGGCCATCAGGTAGTGGAAGATGGGTATGAGTTTTTCGCAAAACGGAGGTTAGTCACAAT 1073
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 955 AGGACATCAGGTAGTGGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1014
Query 1074 ATTCTCAGCTCCAAACTATGGAGGAGAGTTTGACAATGCCGGTGCATTATTGAGCGTGGA 1133
||||||||||||||||||||| || ||||||||||| || ||||||||||| ||||||||
Sbjct 1015 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCATTATTAAGCGTGGA 1074
Query 1134 TCAATCTCTCGTTTGCTCCTTTGAGATTCTGAAACCGGCTCCAGCTTCTAGCACTAATCC 1193
| | ||||| |||||||||||||||||| ||||||| || |||||||| |||| | ||||
Sbjct 1075 TGAGTCTCTTGTTTGCTCCTTTGAGATTATGAAACCCGCCCCAGCTTCAAGCAGTCATCC 1134
Query 1194 TCTCAAGAAGGTACCGAAAATGGGGAAGTCTTGAA 1228
|||||||||||||||||||||||||||||||||||
Sbjct 1135 TCTCAAGAAGGTACCGAAAATGGGGAAGTCTTGAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5