BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05590.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477850 jgi|Araly1|477850|fgenesh2_kg.3__551__AT3G05590.1 1157 0.0
Ahg489546 jgi|Araly1|489546|fgenesh2_kg.6__2680__AT5G27850.1 704 0.0
Ahg930003 jgi|Araly1|930003|scaffold_302460.1 161 6e-39
> Ahg477850 jgi|Araly1|477850|fgenesh2_kg.3__551__AT3G05590.1
Length=704
Score = 1157 bits (626), Expect = 0.0
Identities = 678/704 (96%), Gaps = 0/704 (0%)
Strand=Plus/Plus
Query 12 ATGTAGAAGGTCGGCGGTTCCATCACCACAACGCCGGACGACAATGGGTATTGATCTGAT 71
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTACAAGGTCGGCGGTTCCAGCACCACAACGCCGGACGACAATGGGTATTGATCTGAT 60
Query 72 CGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCT 131
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCCGGAGGTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCT 120
Query 132 CAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGG 191
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 121 CAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTCAGAGCAAGTTCAATGC 180
Query 192 TGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAG 251
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTTTCTAG 240
Query 252 GCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAAC 311
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 241 GCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCTGTCTTGGTTGGAACTGTTAC 300
Query 312 TGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGA 371
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 301 TGATGATTTGAGGGTACACGAGATTCCAGCAATGAAAGTGACTGCCCTGAGATTCACAGA 360
Query 372 GAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGC 431
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAGCTAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGC 420
Query 432 TCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGA 480
Query 492 AGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGT 540
Query 552 TCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAA 611
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GCGGGGCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAGGAGGAAGAGTCGTGGATTCAA 600
Query 612 GGTTTAAGAAAGTTGTTGCCGCCATTGGACTTGATTCTGGAGTACTGTTGCTTCTTGGTT 671
||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||
Sbjct 601 GGTTTAAGAAAGTTGTTGCTGCCATTGGACTTGATTTTGGAGTATTGTCGCTTCTTGGTT 660
Query 672 GCTTTTGTAATCGGATTTTTGTTAGGGAACTCTGTTTTTTCTTT 715
|||| ||||||||| |||||||||| |||||||| |||||||||
Sbjct 661 GCTTGTGTAATCGGGTTTTTGTTAGAGAACTCTGCTTTTTCTTT 704
> Ahg489546 jgi|Araly1|489546|fgenesh2_kg.6__2680__AT5G27850.1
Length=742
Score = 704 bits (381), Expect = 0.0
Identities = 518/583 (89%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 55 ATGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAG 114
|||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 18 ATGGGTATCGATCTTATCGCCGGAGGTAAGAGTAAGAAGACAAAAAGGACTGCTCCAAAG 77
Query 115 TCTGATGATGTCTACCTCAAGCTTACT-GTCAAGCTTTACCGGTTTCTGGTAAGGAGAAC 173
|| |||||||| |||||||||||| || |||||||||||||||||| |||| |||||| |
Sbjct 78 TCCGATGATGTTTACCTCAAGCTT-CTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATC 136
Query 174 T-AATAGCAAGTTCAATGGTGTGATAT-TGAAGAGGCTTTTCATGAGCAAAGTCAACAAA 231
| || ||||||||||||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 137 TGAA-AGCAAGTTCAATGCTGTGAT-TCTCAAGAGGCTTTTCATGAGCAAAGTCAACAAA 194
Query 232 GCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCC 291
||||||||||| || ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 195 GCTCCTCTTTCGCTCTCTAGGCTTGTGGAGTTCATGACGGGCAAGGAGGACAAGATTGCT 254
Query 292 GTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTG 351
|| ||||||||||| || |||||||||||||| || || |||||||| |||||||||||
Sbjct 255 GTGTTGGTTGGAACCATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAAGTT 314
Query 352 ACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGC 411
||||||||||||||||||||||| || || ||| | |||||||||||||| || || |||
Sbjct 315 ACTGCCTTGAGGTTCACAGAGAGGGCTAGAGCTAGAATTGAGAAAGCTGGGGGAGAGTGC 374
Query 412 TTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGA 471
||||||||||||||||| || |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 375 TTAACCTTTGACCAGCTTGCACTCAAAGCTCCATTGGGCCAGAACACAGTTCTCCTTAGA 434
Query 472 GGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACAC 531
||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 435 GGACCAAAGAACTCTCGTGAAGCAGTGAAGCATTTTGGACCTGCTCCTGGTGTGCCACAC 494
Query 532 AGT--CACTCCAAGCCATATGTTCGGGCC-AAGGGAAGGAAGTTCGAGAAGGCCAGAGGA 588
||| |||| |||||||||||| || | |||||||||||||| ||||| || ||||||
Sbjct 495 AGTAGCACT--AAGCCATATGTTAGG-CATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGA 551
Query 589 AAGAGGAAGAGTCGTGGATTCAAGGTTTAAGA-AAGTT-GTTG 629
||| | |||||||||||||||||||| ||||| || || ||||
Sbjct 552 AAGCGAAAGAGTCGTGGATTCAAGGTCTAAGATAACTTTGTTG 594
> Ahg930003 jgi|Araly1|930003|scaffold_302460.1
Length=454
Score = 161 bits (87), Expect = 6e-39
Identities = 95/99 (96%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 179 GCAAGTTCAATGGTGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTC 238
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 154 GCAAGTTCAATGTTGTGATATTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTC 95
Query 239 TTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGG 277
|||| | ||||||||||||||||||||||||||||||||
Sbjct 94 TTTCGCCATCTAGGCTTGTGGAGTTCATGACTGGCAAGG 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5