BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05600.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317420 jgi|Araly1|317420|fgenesh1_pm.C_scaffold_3000436 1646 0.0
Ahg485452 jgi|Araly1|485452|fgenesh2_kg.5__1444__AT3G51000.1 62.1 1e-08
> Ahg317420 jgi|Araly1|317420|fgenesh1_pm.C_scaffold_3000436
Length=996
Score = 1646 bits (891), Expect = 0.0
Identities = 961/996 (96%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 60 ATGGAAGGAATCGATCATAGAATGGTGAGTGTCAATGGCATAACAATGCACATTGCCGAG 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGAATTGATCATAGAATGGTGAGTGTCAATGGCATAACAATGCACATTGCCGAG 60
Query 120 AAAGGTCCCAAAGAAGGACCTGTGGTGCTTCTCCTCCATGGATTCCCTGATCTCTGGTAC 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAAGGTCCCAAAGAAGGACCTGTGGTGCTTCTCCTCCATGGATTCCCAGATCTCTGGTAC 120
Query 180 ACGTGGCGTCACCAGATTAGTGGGTTATCATCTCTAGGTTACCGCGCTGTAGCTCCAGAC 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGTGGCGTCACCAGATTTGTGGGTTATCATCTCTAGGTTACCGCGCTGTAGCTCCAGAC 180
Query 240 CTCCGAGGCTACGGAGACTCTGATTCGCCGGAGTCTTTCTCCGAGTACACGTGTCTTAAC 299
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CTCCGAGGTTACGGAGACTCTGATTCACCGGAGTCTTTCTCCGAGTACACGTGTCTTAAC 240
Query 300 GTCGTTGGGGACCTCGTAGCTCTTCTGGACAGTGTTGCTGGAAATCAAGAGAAGGTGTTT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GTCGTTGGGGACCTCGTAGCTCTTCTGGACAGTGTTGCTGGAGATCAAGAGAAGGTGTTT 300
Query 360 CTGGTCGGTCATGATTGGGGAGCCATTATCGGATGGTTTCTCTGTTTGTTTCGACCTGAA 419
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 301 CTGGTCGGTCATGATTGGGGAGCCATTATTGGATGGTTCCTCTGTTTGTTTCGACCTGAG 360
Query 420 AAGATTAACGGCTTTGTGTGTTTGAGTGTGCCGTATAGATCAAGAAACCCTAAAGTCAAG 479
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAGATTAAGGGCTTTGTGTGTTTGAGTGTGCCGTATAGATCAAGAAACCCTTTAGTCAAG 420
Query 480 CCCGTTCAAGGGTTCAAGGCTGTATTTGGAGATGATTACTACATTTGTAGATTTCAGGAA 539
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAGTTCAAGGGTTTAAGGCTGTGTTTGGAGATGATTACTACATTTGTAGATTTCAGGAA 480
Query 540 CCGGGGAAGATTGAAGGAGAGATTGCAAGTGCAGATCCAAGAATATTTCTGAGGAACCTC 599
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CCGGGGAAGACTGAAGCAGAGATTGCGAGTGCAGATCCAAGAATATTTCTGAGGAACCTC 540
Query 600 TTCACAGGGAGGACACTCGGTCCGCCGATTTTACCTAAGGATAATCCCTTTGGGGAAAAA 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 TTCACAGGGAGGTCACTCGGTCCGCCGATTTTACCTAAGGATAATCCCTTTGGAGAAAAC 600
Query 660 CCTAACCCTAATAGCGAAAACATTGAATTGCCTGAATGGTTTTCTAAGAAAGATCTCGAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 CCTAACCCTAATAGCGAAAACATTGAATTGCCTGAATGGTTTTCTAAGAAAGATCTTGAT 660
Query 720 TTCTATGTCTCCAAATTCGAGAAGGCAGGATTTACCGGTGGATTGAACTACTACAGAGCC 779
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TTCTACGTCTCCAAATTCGAGAAGACAGGATTTACCGGTGGATTGAACTACTACAGAGCC 720
Query 780 ATGGATCTGAATTGGGAGCTCACTGCACCATGGACCGGAGCTAAGATTCAAGTTCCAGTG 839
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 721 ATGGATCTAAATTGGGAGCTCACTACACCATGGACCGGAGCTAAGGTTCAAGTTCCAGTG 780
Query 840 AAGTTCATGACAGGTGACTTCGACATGGTGTACACCACACCAGGGATGAAAGAGTACATT 899
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 781 AAGTTCATGACCGGTGACTTCGACATGGTTTACACCACACCAGGGATGAAAGAGTATATT 840
Query 900 CACGGTGGTGGATTTGCTGCAGATGTTCCAACTCTTCAAGAGATAGTGGTGATTGAAGAT 959
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 CACGGTGGTGGGTTTTCAGCAGATGTTCCAACTCTTCAAGAGATAGTAGTGATTGAAGAT 900
Query 960 GCTGGTCACTTCGTTAACCAAGAGAAACCTCAAGAGGTCACTGCTCACATCAATGACTTC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTGGTCACTTCGTTAACCAAGAGAAACCTCAAGAGGTCACTGCTCACATCAATGACTTC 960
Query 1020 TTCACCAAGCTTCGGGACAACAACAAAAGCTTTTAG 1055
||||||||||||| ||||||||||||||||||||||
Sbjct 961 TTCACCAAGCTTCAGGACAACAACAAAAGCTTTTAG 996
> Ahg485452 jgi|Araly1|485452|fgenesh2_kg.5__1444__AT3G51000.1
Length=1109
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 762 TTGAACTACTACAGAGCCATGGATCTGAATTGGGAG 797
||||| ||||||||||||||||||||||||||||||
Sbjct 789 TTGAATTACTACAGAGCCATGGATCTGAATTGGGAG 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5