BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05610.1
Length=2411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477851 jgi|Araly1|477851|fgenesh2_kg.3__552__AT3G05610.1 3382 0.0
> Ahg477851 jgi|Araly1|477851|fgenesh2_kg.3__552__AT3G05610.1
Length=2385
Score = 3382 bits (1831), Expect = 0.0
Identities = 2236/2423 (92%), Gaps = 61/2423 (3%)
Strand=Plus/Plus
Query 1 ACACTCCCAAGGAGGCTACGTAACCTTCGACGGAGGAGTCCATAAAACTCACATTCTCAt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ACACTCCTAAGGAGGCTACGTAACCTTCGACGGAGGAGTCCATAAAACTCACATTTTCA- 59
Query 61 ttttttCTCAAAAGAACAACGAACAGCTCTTATAtttttttACAATAATTCTTCAGAGCT 120
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 60 --TTTTCTCAAAAGAACAACGAACAGCTCTAATA-TTTTTTACAATAATTCTTCAGAGCT 116
Query 121 GTTTAAGTTCAACAACAATTTGATTAAGAGAAAACCACATAAATATTAATTAGTGTAACG 180
||| ||||||||||||||||||||| |||||| || | | |||||||||| | |||||||
Sbjct 117 GTTCAAGTTCAACAACAATTTGATTTAGAGAAGACAAAACAAATATTAATCATTGTAACG 176
Query 181 AAAAACACAAAACAAATATGTCGTACGGATACGACGATGAATCCAAGAGGAAGAGGAGGT 240
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 AAAAACAC-AAACAATTATGTCGTACGGATACGACGATGAAGCCAAGAGGAAGAGGAGGT 235
Query 241 ACATTGTTATCACCATCTCCTCTGTTCTTTTGATCTCGATGGTGGTTGCGGTTACCGTTG 300
| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 236 ATGTTGTTATCACCATCTCCTCTGTTCTTCTGATCTCGATGGTAGTCGCGGTTACCGTTG 295
Query 301 GTGTCAGCCTCAATAAGCATGACGGTGACTCTAAAGGTAAAGCAGAGGTAA-ATGCTTCC 359
||||||||||||||||| ||||||||||||| ||||||||| |||| ||| | ||||||
Sbjct 296 GTGTCAGCCTCAATAAGAATGACGGTGACTCCGAAGGTAAAGGAGAGATAACA-GCTTCC 354
Query 360 GTCAAGGCCGTCAAGGATGTTTGTGCACCAACTGATTACAGAAAGACTTGTGAAGACACT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTCAAGGCCGTGAAGGATGTTTGTGCACCAACTGATTACAGAAAGACTTGTGAAGACACT 414
Query 420 CTGATTAAGAACGGGAAGAACACAACCGACCCGATGGAGTTGGTTAAGACTGCGTTTAAT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 CTGATTAAGAACGGGAAGAACACAACCGACCCGATGGAGTTGGTTAAGACTGCGTTTAGT 474
Query 480 GTTACGATGAAGCAGATCACGGACGCAGCTAAGAAGTCGCAGACGATTATGGAGCTTCAG 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 GTTACGATGAAGCAGATCACGGACGCAGCTAAGAAGTCGCAGACGATGATGGAGCTTCAG 534
Query 540 AAGGATTCAAGGACTAGGATGGCGCTTGATCAATGCAAGGAGCTTATGGATTACGCGTTG 599
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 AAGGATCCAAGGACAAGGATGGCGCTTGATCAGTGCAAGGAGCTTATGGATTACGCGTTG 594
Query 600 GACGAACTAAGTAACTCTTTCGAGGAGCTTGGAAAATTTGAGTTCCACCTGCTCGACGAG 659
| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 GGTGAGCTAAGTAACTCTTTCGAGGAGCTTGGAAAATTTGAGTTCCACTTGCTCGACGAA 654
Query 660 GCTTTGATCAATCTGAGGATTTGGCTTAGCGCAGCGATCAGCCACGAGGAGACTTGTCTT 719
||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 655 GCTCTGATCAATCTGAGGATTTGGCTCAGCGCGGCAATCAGCCACGAGGAGACTTGTCTT 714
Query 720 GAAGGGTTTCAAGGAACACAAGGGAATGCTGGAGAGACAATGAAGAAAGCGTTGAAGACT 779
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 715 GAAGGGTTTCAAGGAACGCAAGGGAATGCAGGAGAGACAATGAAAAAAGCGTTGAAGACC 774
Query 780 GCAATCGAGTTGACCCACAACGGGCTAGCGATCATCAGCGAAATGTCGAATTTTGTTGGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCAATCGAGTTGACCCACAACGGGCTAGCGATCATCAGCGAAATGTCGAATTTTGTTGGC 834
Query 840 CAAATGCAGATTCCGGGGCTGAACAGTCGTCGACTTTTGGCTGAAGGATTCCCTTCGTGG 899
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 835 CAAATGCAGATTCCAGGGCTGAACAGCCGCCGACTTTTGGCCGAAGGATTCCCTTCGTGG 894
Query 900 GTAGACCAGCGTGGGCGTAAACTCCTACAAGCTGCTGCCGCATATTCCGATGTGAAGCCT 959
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 TTAGACCAGCGTGGGCGTAAACTCCTGCAAGCTGCTGCCGCATATTCCGATGTGAAGCCT 954
Query 960 GATATTGTGGTGGCACAGGACGGGAGCGGTCAATACAAGACGATCAATGAAGCGTTGCAG 1019
||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 955 GATATTGTGGTTGCCCAGGACGGGAGCGGTCAATACACGACGATCAATGAAGCGTTGCAG 1014
Query 1020 TTTGTCCCCAAGAAGAGGAACACAACTTTCGTGGTTCACATTAAGGCTGGACTCTACAAG 1079
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 TTTGTCCCCAAGAAGAAGAACACAACTTTCGTGGTTCACATTAAGGCTGGACTATACAAG 1074
Query 1080 GAGTATGTTCAGGTGAACAAGACCATGTCGCATCTTGTGTTCATCGGTGATGGTCCCGAC 1139
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1075 GAGTATGTTCAGGTGAACAAGAGCATGACGCATCTTGTGTTCATCGGTGATGGTCCCGAC 1134
Query 1140 AAAACTATCATTTCCGGCAACAAAAATTACAAGGATGGTATCACCACCTACCGTACCGCC 1199
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1135 AAAACCATCATTTCCGGAAATAAGAATTACAAGGATGGTATCACCACCTACCGTACCGCC 1194
Query 1200 ACTGTCGCCATTGTTGGAAACTACTTCATTGCCAAGAACATTGGGTTCGAAAACACCGCT 1259
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1195 ACTGTCGCCATTGTTGGAAACTACTTCATTGCCAAGAACATCGGGTTTGAAAACACCGCT 1254
Query 1260 GGGGCAATAAAACATCAAGCGGTTGCAG-TTAGGGTTCAATCAGATGAGTCCATATTTTT 1318
|||||||||||||||||||||||||| | |||| |||||||| |||||||| ||||||||
Sbjct 1255 GGGGCAATAAAACATCAAGCGGTTGC-GCTTAGAGTTCAATCGGATGAGTCGATATTTTT 1313
Query 1319 CAACTGTAGATTCGATGGCTACCAAGACACGCTCTACACTCACTCCCACCGTCAGTTCTT 1378
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CAATTGTAGATTCGATGGCTACCAAGACACGCTCTACACTCACTCCCACCGTCAGTTCTT 1373
Query 1379 CCGTGATTGTACCATTTCAGGCACCATTGATTTCCTCTTTGGAGATGCGGCTGCTGTATT 1438
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1374 CCGTGATTGTACCATTTCAGGCACAATTGATTTCCTTTTTGGAGATGCAGCTGCTGTATT 1433
Query 1439 CCAAAACTGTACGTTGTTGGTGAGGAAGCCACTCCCAAACCAAGCATGCCCTATCACAGC 1498
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1434 CCAAAACTGTACTTTGTTGGTGAGGAAGCCACTCCCTAACCAAGCATGCCCGATCACAGC 1493
Query 1499 CCACGGTCGAAAAGACCCAAGGGAA-TCCACTGGATTTGTGTTCCAAGGGTGCACCATTG 1557
||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||||||
Sbjct 1494 CCACGGTCGTAAAGACCCAAGGGAAGTT-ACCGGATTTGTGTTCCAAGGATGCACCATTG 1552
Query 1558 CCGGTGAACCAGATTACTTGGCTGTCAAGGAAACCAGCAAAGCCTATCTCGGTAGGCCAT 1617
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1553 CCGGTGAACCAGATTACTTGGCAGTCAAGGAAACCAGCAAAGCCTATCTTGGTAGGCCAT 1612
Query 1618 GGAAGGAATATTCAAGGACTATCATCATGAACACTTTCATCCCAGATTTTGTTCAGCCTC 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1613 GGAAGGAATATTCAAGGACTATCATCATGAACACTTTCATCCCAGATTTTGTTCAGCCAC 1672
Query 1678 AAGGATGGCAACCATGGCTCGGGGACTTCGGCCTCAAGACATTGTTCTACTCTGAGGTCC 1737
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 1673 AAGGATGGCAACCATGGCTCGGTGATTTCGGCCTCAAGACATTATTTTACTCTGAGGTCC 1732
Query 1738 AAAACACAGGACCGGGATCCGCCCTTGCAAACCGGGTTACTTGGGCTGGAATCAAGACAT 1797
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1733 AAAACACCGGACCGGGATCCGCCCTTGCAAACCGGGTTACATGGGCTGGAATCAAGACAC 1792
Query 1798 TGAGCGAAGAAGATATCCTCAAGTTCACACCGGCTCAGTACATCCAAGGTGACGACT-GG 1856
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1793 TGAGCGACGAAGATATCCTCAAGTTCACACCGGCTCAGTACATCCAAGGTGAT-ACTTGG 1851
Query 1857 ATTCCAGGCAAAGGTGTTCCGTACACTACAGGCCTTTTGGCTGGGAACCCGGCCGCTGCA 1916
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1852 GTTCCAGGCAAAGGTGTTCCGTACACTCCAGGCCTTTTGGCTGGGAACCCGGCCGCTGCG 1911
Query 1917 ACCACCACCCCAAGCGTCTCAGCTGCTGCTCCAGGTTTCTCCACCTTCACGGATACAAGT 1976
||||||||||| |||| |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1912 ACCACCACCCCGAGCGGCTCAGCTGCT-C-C-AGGTTTCTCCACCTTCACGGATACAAGT 1968
Query 1977 GGCGCTGACTCAATTGCTCCAACAGCTTCCCCAGCA-G--C--TTCC-CCGGAAAGTTCA 2030
||||||||||| ||||||||| |||||||||| | | | | || | |||||||||||
Sbjct 1969 GGCGCTGACTCGATTGCTCCAGCAGCTTCCCCGGAAAGTTCACTTGCTCCGGAAAGTTCG 2028
Query 2031 ATTA-GCATGGCTTACA-CGGGGACAGCTTCTCCGGAAAGTTCGATTAAGGTGTCTTCTT 2088
|||| | || |||| || ||| || ||||| || |||||||||||||||||| ||||
Sbjct 2029 ATTAAG-ATAGCTT-CATCGGAAACGGCTTCCCCAGAAAGTTCGATTAAGGTGGCTTC-- 2084
Query 2089 CAACGGAGACGGCTTCCCCGGAAAGTTCATTTACGGAGGCTTCAACGG---CT--T-CCC 2142
|||||||||||||||||| ||||||||| ||| || ||||||||||| || | |||
Sbjct 2085 -AACGGAGACGGCTTCCCCAGAAAGTTCAATTAAGGTGGCTTCAACGGAGACTGCTTCCC 2143
Query 2143 CAGAAAGTTCAATTATGGTGGCTTCAACGGAGAGCTCTGGTTCGtttttttCAATGTTTA 2202
| ||||||||||| | ||||||||||||||||||||||| |||| | ||||||||| ||
Sbjct 2144 CGGAAAGTTCAATCAAGGTGGCTTCAACGGAGAGCTCTGTTTCGATGGTTTCAATGTCTA 2203
Query 2203 CCTAAAAGATTGATTAAGATGGCATAAAATGTGTTTTTTCT-TTACTCTAATTCAAGCAA 2261
||||||| ||||||||||||| |||| |||||||||||| | ||||||||||||||| ||
Sbjct 2204 CCTAAAAAATTGATTAAGATGCCATATAATGTGTTTTTTTTCTTACTCTAATTCAAG-AA 2262
Query 2262 AACCTGAAAGGAACAAAAATATTTGCACAACCTTGAGGACTTCAGGATTATTGGTATTCC 2321
|| | | ||||||||||||||||||||||||||||||| ||||
Sbjct 2263 AA--T--------------T----GCACAACCTTGAGGACTTCAGGATTATTGGTCTTCC 2302
Query 2322 AAATTGTTGACATTAATGTTT-AGCTTTGTAAACTCATGTTTAATATAT-CAGTATATTA 2379
||||||||| |||||||||| || |||||||||||||||||||||| | ||||||||||
Sbjct 2303 AAATTGTTGGGATTAATGTTTTAGATTTGTAAACTCATGTTTAATAT-TGCAGTATATTA 2361
Query 2380 AAA-TGCTGTTTATAAATCTATT 2401
||| || ||||||||||||||||
Sbjct 2362 AAAATGTTGTTTATAAATCTATT 2384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90845234325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5