BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05620.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477852 jgi|Araly1|477852|fgenesh2_kg.3__553__AT3G05620.1 2475 0.0
> Ahg477852 jgi|Araly1|477852|fgenesh2_kg.3__553__AT3G05620.1
Length=1638
Score = 2475 bits (1340), Expect = 0.0
Identities = 1538/1633 (94%), Gaps = 16/1633 (1%)
Strand=Plus/Plus
Query 5 GGATTAC-CACCGCTCTTCTCTTAGTTATGCTTATGTCCGTTCACACTTCCTCGTATGAA 63
||||| | ||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 13 GGATTTCTCACCGCTCTTCTCTTAGCTATGCTTATGTTTGTTCACACTTACTCGTATGAA 72
Query 64 ACCACAATTTTAAAACCATACAAAGAAGATAACTTTCGGTCTCTTGTCGCGAAAGCATGC 123
|||||| |||| ||||| |||| |||||| || ||||||||||||||||||||||| |||
Sbjct 73 ACCACAGTTTTCAAACCGTACATAGAAGAAAAGTTTCGGTCTCTTGTCGCGAAAGCGTGC 132
Query 124 CAATTTATCGATGCTCACGAGTTGTGCGTCTCTAACATCTGGACACACGTCAAGGAATCG 183
|||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 133 CAATTTATTGATGCTCACGAGTTGTGCGTCTCTAACATCCGGACGCACATCAAGGAATCG 192
Query 184 GGTCACGGGTTAAAC-CCGCATTCGGTTTTACGTGCTGCGGTAAAGGAAGCACATGACAA 242
|||||||| || ||| ||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 193 GGTCACGGATT-AACTCCGCATTCGGTTTTAAGCGCTGCAGTAAAGGAAGCACATGACAA 251
Query 243 AGCCAAGTTAGCAATGGAAAGAATCCCAACGGTAAT-GATGTTATCTATCCGTTCGCGTG 301
||| ||||||||||||||| ||||||||||||| || || ||||||||||||||||||||
Sbjct 252 AGCGAAGTTAGCAATGGAAGGAATCCCAACGGT-ATCGACGTTATCTATCCGTTCGCGTG 310
Query 302 AGCAAGTTGCCATAGAGGATTGCAAAGAGCTTGTAGGCTTCTCGGTAACAGAGCTAGCAT 361
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 311 AGCAAGTTGCCATAGAGGATTGCAAAGAGCTTGTAGGCTTCTCGGTAACGGAGCTAGCAT 370
Query 362 GGTCGATGCTGGAGATGAACAAACTCCATGGAGGAGGAGGAATAGATCTAGACGATGGCT 421
|||||||||||||||||||||||||||| ||||||||||||||||| | | | |||||
Sbjct 371 GGTCGATGCTGGAGATGAACAAACTCCACGGAGGAGGAGGAATAGA--T-G--G-TGGCT 424
Query 422 CTCACGATGCTGCTGCAGCAGGAGGCAATCTTAAAACCTGGCTTAGCGCGGCCATGAGTA 481
|||| || |||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 425 CTCATGACGCTGCTGCTGCAGGAGGCAATCTTAAAACCTGGCTCAGCGCGGCTATGAGTA 484
Query 482 ACCAAGACACGTGTCTAGAAGGGTTTGAAGGAACAGAGAGGAAGTACGAGGAATTGATCA 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 485 ACCAAGACACGTGTCTAGAAGGGTTTGAAGGAACAGAGAGAAAGTACGAGGAATTGATCA 544
Query 542 AAGGTAGCTTAAGACAAGTCACTCAGCTTGTGAGCAATGTCTTAGACATGTACACGCAGC 601
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 545 AAGGTAGCTTAAGACAAGTCACTCAGCTTGTGAGCAACGTCTTAGACATGTATACGCAGC 604
Query 602 TCAATGCCTTGCCTTTCAAGGCATCTAGGAACGAGAGCGTCATCGCAAGTCCTGAGTGGC 661
| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||| ||||
Sbjct 605 TTAATGCCTTGCCTTTCAAGGCATCTAGGAATGAGAGCTTCACCGCAAGCCCTGACTGGC 664
Query 662 TCACGGAGACCGACGAGAGCCTCATGATGCGTCATGACCCCAGTGTC-ATGCATCCAAAC 720
||||||||||||| |||||||||||||||| |||||||||||||| | ||||| ||||||
Sbjct 665 TCACGGAGACCGATGAGAGCCTCATGATGCATCATGACCCCAGTG-CGATGCACCCAAAC 723
Query 721 ACGGTTGTGGCGATAGATGGAAAAGGGAAGTATCGGACAATTAATGAGGCCATCAACGAG 780
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 724 ACGGTTGTGGCGATAGATGGAAAAGGGAAGTATCGGACGATCAATGAGGCCATCAACGAG 783
Query 781 GCTCCTAATCATAGCACAAAGCGATATGTTATATATGTTAAGAAAGGTGTGTATAAAGAA 840
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 784 GCTCCTAATCATAGCACAAAGCGATATGTCATATATGTGAAGAAAGGTGTGTATAAAGAA 843
Query 841 AATATTGATTTGAAGAAGAAGAAGACGAACATTATGCTTGTTGGTGACGGAATAGGACAG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 844 AATATTGATTTGAAGAAGAAGAAGACGAACATTATGCTTGTTGGTGACGGTATCGGACAG 903
Query 901 ACGATTATTACCGGTGACCGGAATTTCATGCAGGGTCTTACGACATTCCGAACTGCAACC 960
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 904 ACTATTATTACCGGTGACCGGAATTTCATGCAGGGTCTTACCACATTCCGAACTGCAACC 963
Query 961 GTTGCTGTTTCCGGAAGAGGATTCATTGCAAAGGACATAACATTCAGAAACACGGCTGGT 1020
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 964 GTCGCTGTTTCCGGAAGAGGATTCATAGCAAAGGACATAACATTCAGAAACACGGCTGGG 1023
Query 1021 CCGCAAAACCGTCAAGCTGTCGCATTGAGGGTTGATTCTGACCAATCCGCCTTCTATCGA 1080
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1024 CCGCAAAACCGTCAAGCTGTCGCATTGAGGGTTGACTCCGACCAATCCGCCTTCTATCGA 1083
Query 1081 TGTAGCGTGGAAGGTTATCAAGACACTCTTTACGCCCATTCCCTCCGTCAGTTCTATAGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGTAGCGTGGAAGGTTATCAAGACACTCTTTACGCCCATTCCCTCCGTCAGTTCTATAGA 1143
Query 1141 GATTGTGAAATTTATGGTACGATTGATTTCATATTCGGAAACGGCGCCGCGGTTTTACAA 1200
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1144 GATTGTGAAATTTATGGTACCATTGATTTCATATTCGGAAATGGCGCTGCGGTTTTACAG 1203
Query 1201 AACTGTAAAATCTACACTCGGGTCCCGCTACCGCTCCAGAAGGTAACGATAACCGCGCAA 1260
|| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1204 AATTGTAAAATCTACACACGGGTTCCGTTACCGCTCCAGAAGGTAACGATAACCGCGCAA 1263
Query 1261 GGAAGAAAAAGTCCA-AATCAAAATACAGGGTTCGTAATCCAGAACAGTTACGTGCTGGC 1319
||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1264 GGAAGAAAAAG-CCGTAATCAAAATACAGGGTTCGTAATCCAGAACAGTTACGTGTTGGC 1322
Query 1320 TACACAACCTACTTATCTTGGCCGGCCATGGAAACTTTACTCAAGAACGGTTTACATGAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TACACAACCTACTTATCTTGGCCGGCCATGGAAACTTTACTCAAGAACGGTTTACATGAA 1382
Query 1380 CACTTACATGAGCCAGTTGGTCCAACCCAGAGGATGGCTTGAGTGGTTTGGTAATTTTGC 1439
|||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1383 CACTTACATGAGCCAGCTGGTCCAACCCAGAGGATGGCTTGAATGGTTTGGCAACTTTGC 1442
Query 1440 TTTGGACACTTTGTGGTATGGAGAATACAATAATATTGGGCCAGGTTGGCGATCATCAGG 1499
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 1443 TTTGGACACTTTGTGGTATGGAGAATACAATAACATTGGGCCGGGTTGGCGATCAACGGG 1502
Query 1500 TCGGGTTAAATGGCCTGGTTATCATATCATGGACAAACGGACTGCATTATCGTTCACCGT 1559
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1503 TCGGGTTAAATGGCCTGGTTATCATATCATGGACAAACGGACTGCATTGTCATTCACCGT 1562
Query 1560 TGGATCGTTCATTGACGGTAGGAGATGGCTTCCGGCAACAGGTGTCACATTCACCGCTGG 1619
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1563 CGGATCGTTCATTGACGGTCGGAGATGGCTTCCGGCAACAGGTATCACATTCACCGCTGG 1622
Query 1620 TCTAGCTAACTAA 1632
|||| ||| ||||
Sbjct 1623 TCTA-CTAGCTAA 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5