BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05630.1
Length=3505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477854 jgi|Araly1|477854|fgenesh2_kg.3__555__AT3G05630.1 3323 0.0
> Ahg477854 jgi|Araly1|477854|fgenesh2_kg.3__555__AT3G05630.1
Length=3487
Score = 3323 bits (1799), Expect = 0.0
Identities = 2002/2101 (95%), Gaps = 9/2101 (0%)
Strand=Plus/Plus
Query 27 TATATAACGTCGATTTATTGATCAGTGGAATCTCGAGTATTTCGGACATGCAATCGTGAA 86
|||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1 TATATAACGTCGATCAATTGATTAGAGGAATCTCGAGTATTTCTGACATGCAATCGTGAA 60
Query 87 CGGCGAGTTTCGACGACGGTTTGGGG-A-GTTAATCGATGTCGACGGATAAATTACTACT 144
||||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||
Sbjct 61 CGGCGAGTTTCGACGACGGTTAGGGGAATATTAATCGATGTCGACGGATAAATTGCTACT 120
Query 145 TCCTAACGGCGTTAAGTCAGACGGAGTCATCAGAATGACCAGAGCTGATGCT---GCGGC 201
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 121 TCCTAACGGCGTTAAGTCAGACGGAGTCATCAGAAGGACCAGAGCTGATGCTGCGGCGGC 180
Query 202 GGCGGCAGCTTCTTCTTCTCTCGGCGGTGGAAGTCAAATATTCGACGAGCTTCCCAAGGC 261
|||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 181 GGCGGCCGCTTCTTATTCTCTCGGCGGTGGAAGTCAAATATTTGACGAGCTCCCCAAGGC 240
Query 262 TGCGATCGTCTCGGTCTCGAGACCTGACACCACCGATTTTAGTCCCTTGCTTCTTTCTTA 321
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TGCGATCGTCTCGGTCTCGAGACCCGACACCACCGATTTTAGTCCCTTGCTTCTTTCTTA 300
Query 322 CACCTTGGAGCTTCAGTATAAACAGTTCAAGTGGACATTACAAAAGAAGGCTTCTCAAGT 381
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CACCTTGGAGCTTCAGTATAAACAGTTCAAGTGGACATTACAGAAGAAGGCTTCTCAAGT 360
Query 382 TCTGTACTTACATTTTGCGTTGAAGAAACGTTTGATCATTGAAGAACTTCACGACAAGCA 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTATACTTACATTTTGCGTTGAAGAAACGTTTGATCATTGAAGAACTTCACGACAAGCA 420
Query 442 AGAACAGGTTAGAGAGTGGCTACACAGCTTGGGGATTTTTGATATGCAAGGATCAGTTGT 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAACAGGTTAGAGAGTGGCTACACAGCTTGGGGATTTTTGATATGCAAGGATCAGTTGT 480
Query 502 GCAAGATGATGAAGAACCTGACGATGGTGCTCTTCCTCTGCACTATACTGAAGATAGTAT 561
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 481 GCAAGATGATGAAGAACCTGATGATGGCGCTCTTCCTCTGCACTATACTGAAGATAGTAT 540
Query 562 CAAGAACAGGAATGTTCCTTCCCGTGCAGCGCTTCCAATCATTCGTCCAACGATAGGCCG 621
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 541 CAAGAACAGGAATGTTCCTTCGCGTGCAGCGTTTCCAATCATTCGTCCAACTATAGGCCG 600
Query 622 GTCAGAGACAGTTGTAGATCGTGGGAGAACCGCAATGCAAGGCTACTTGAGTCTCTTTCT 681
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCAGAGACAGTTGTAGACCGTGGGAGAACCGCAATGCAAGGCTACTTGAGTCTCTTTCT 660
Query 682 AGGGAACTTGGACATTGTAAACTCCAAAGAGGTCTGCAAGTTCCTAGAAGTTTCTAGACT 741
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 661 AGGGAACTTGGACATTGTAAACTCTAAAGAGGTCTGCAAGTTCCTTGAAGTTTCTAGACT 720
Query 742 CTCATTTGCTAGAGAGTACGGTTCCAAGATGAAAGAAGGGTATGTCACAGTGAAGCACTT 801
||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
Sbjct 721 CTCGTTTGCTAGAGAGTACGGTTCCAAGATGAAAGAAGGATTTGTCACAGTGAAGCACCT 780
Query 802 GAGGGACGTCCCAGGTTCTGATGGTGTCCGATGCTGTCTTCCTACACACTGTCTCGGTTT 861
|||||| ||||| ||||||||| |||||||||||||||||||| |||| |||||||| ||
Sbjct 781 GAGGGAAGTCCCGGGTTCTGATAGTGTCCGATGCTGTCTTCCTTCACATTGTCTCGGCTT 840
Query 862 CTTCGGAACTAGCTGGACAAAGGTTTGGGCGGTTCTGAAACCAGGATTTTTGGCGTTACT 921
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 841 CTTTGGAACTAGCTGGACAAAGGTTTGGGCCGTTCTGAAACCGGGATTCTTGGCGTTACT 900
Query 922 AGAAGATCCATTCAGCGGAAAGCTTCTAGATATAATGGTGTTCGACACATTGGGGTTGCA 981
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 901 AGAAGATCCATTTAGCGGAAAGCTTCTAGATATAATGGTGTTTGACACATTGGGGTTAC- 959
Query 982 AG-GTACTAAAGAGTCTTCTGAACAACCGCGTTTGGCTGAACAGGTGAAGGAACACAACC 1040
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAGTACGAAAGAGTCTTCTGAACAACCGCGTTTGGCTGAACAGGTGAAGGAACACAACC 1019
Query 1041 CATTGCGTTTTGGCTTTAAAGTTACTAGTGGGGACCGAACCGTGAGGCTGAGAACAACGA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1020 CATTGCGTTTTGGCTTTAAAGTTACTAGTGGGGACCGAACCGTGAGGCTGAGAACGACCA 1079
Query 1101 GCAGCAGGAAAGTTAAAGAGTGGGTTAAGGCCGTGGACGAAGCTGGTTGTTACAGTCCAC 1160
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 GCAGCAGGAAAGTTAAAGAGTGGGTTAAGGCCGTGGACGAAGCTGGCTGTTACAGTCCAC 1139
Query 1161 ATCGGTTTGGTTCGTTTGCACCACCTAGAGGCTTGACATCGGACGGAAGCCAGGCACAGT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 ATCGGTTTGGTTCGTTTGCACCACCTAGAGGCTTGACATCGGACGGAAGCCAGGCGCAGT 1199
Query 1221 GGTTCGTAGACGGTCACACTGCGTTTGAAGCTATCGCGTTTGCAATCCAAAACGCAACAT 1280
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 GGTTCGTAGACGGTCACACTGCGTTTGAAGCCATCGCGTTTGCAATCCAAAACGCAACAT 1259
Query 1281 CAGAGATATTTATGACTGGTTGGTGGTTATGTCCGGAGCTATATCTCAAACGCCCCTTTG 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGAGATATTTATGACTGGTTGGTGGTTATGTCCGGAGCTATATCTCAAACGCCCCTTTG 1319
Query 1341 AAGATCATCCATCATTGCGGCTCGATGCATTGCTGGAGACAAAAGCAAAACAGGGCGTTA 1400
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGATCATCCGTCATTGCGGCTCGATGCATTGCTGGAGACAAAAGCAAAACAGGGCGTTA 1379
Query 1401 AGATATATATTCTTCTGTATAAGGAAGTCCAAATCGCGCTGAAAATCAACAGCT-TGTAC 1459
|||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1380 AGATTTATATTCTTCTGTATAAGGAAGTCCAAATCGCGCTGAAAATCAACAG-TATGTAC 1438
Query 1460 AGCAAGAAACGGCTTCAAAACATTCACAAGAACGTCAAAGTTCTTCGTTATCCAGACCAT 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGCAAGAAACGGCTTCAAAACATTCACAAGAACGTCAAAGTTCTTCGTTATCCAGACCAT 1498
Query 1520 CTCTCCTCCGGCATTTACCTCTGGTCGCACCACGAGAAAATAGTGATTGTAGATTACCAA 1579
|||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1499 CTCTCCTCCGGCATATACCTCTGGTCGCACCACGATAAGATAGTGATTGTGGATTACCAA 1558
Query 1580 GTTTGTTTCATTGGAGGGTTAGATCTCTGTTTTGGGCGGTACGATACAGCGGAGCACAAG 1639
||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 1559 GTTTGCTTCATTGGAGGGTTAGATCTCTGTTTTGGCCGCTACGATACAGCTGAACACAAG 1618
Query 1640 ATTGGAGATTGCCCTCCTTATATATGGCCTGGAAAAGATTACTACAATCCTAGAGAATCT 1699
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1619 ATCGGAGATTGCCCTCCTTATATATGGCCAGGAAAGGATTATTACAATCCTAGAGAATCT 1678
Query 1700 GAACCAAATTCGTGGGAAGAAACGATGAAAGATGAGTTAGACAGGAGAAAGTACCCGCGA 1759
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1679 GAACCAAACTCATGGGAAGAAACGATGAAAGATGAGCTAGACAGGAGAAAGTACCCGAGA 1738
Query 1760 ATGCCGTGGCACGATGTCCACTGCGCTCTATGGGGACCGCCTTGTCGGGATGTGGCTCGA 1819
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 1739 ATGCCGTGGCACGAAGTCCACTGTGCTCTATGGGGACCGCCTTGTCGCGATGTGGCTAGA 1798
Query 1820 CATTTTGTCCAGCGGTGGAACCACTCTAAGAGAAACAAGGCACCTAATGAACAGACGATT 1879
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1799 CATTTTGTCCAGAGGTGGAACCACTCTAAGAGAAACAAGGCACCTAATGAACAGACAATT 1858
Query 1880 CCATTGTTGATGCCTCACCACCACATGGTTCTTCCTCACTACTTGGGAACTAGAGAGATC 1939
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1859 CCGTTGCTGATGCCTCACCACCATATGGTTCTTCCTCACTACTTGGGAACTAGAGAGATC 1918
Query 1940 GATATAATCGCAGCGGCTAAACCAGAGGAAGACCCTGACAAACCTGTCGTTCTTGCCAGA 1999
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1919 GATATTATCGCAGCGGCTAAACCCGAGGAAGATCCTGACAAACCTGTTGTTCTTGCCAGA 1978
Query 2000 CATGACTCTTTCTCTTCTGCCTCACCGCCCCAAGAAATCCCTTTGCTTCTCCCACAAGAA 2059
|| ||||||||||||||| | || ||||| || || ||||||||||||||||||||||||
Sbjct 1979 CAAGACTCTTTCTCTTCTACATCGCCGCCACAGGACATCCCTTTGCTTCTCCCACAAGAA 2038
Query 2060 ACCGATGCAGATTTCGCCGGCAGAGGAGATCTGAAGTTAGACAGCGGTGCAAGACAAGAT 2119
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2039 ACCGATGCAGATTTCACCAGCAGAGGAGATCTGAAGTTAGACAGCGGTTCAAGACAAGAT 2098
Query 2120 C 2120
|
Sbjct 2099 C 2099
Score = 2183 bits (1182), Expect = 0.0
Identities = 1302/1361 (96%), Gaps = 3/1361 (0%)
Strand=Plus/Plus
Query 2119 TCCTGGGGAAACTTCAGAGGAAAGCGATCTGGACGAGGCTGTGAACGACTGGTGGTGGCA 2178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2128 TCCTGGGGAAACTTCAGAGGAAAGCGATCGGGACGAGGCTGTGAACGACTGGTGGTGGCA 2187
Query 2179 GATTGGGAAGCAGAGTGATTGCCGGTGTCAAATAATCAGAAGTGTTAGCCAATGGTCTGC 2238
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 GATTGGGAAGCAAAGTAATTGCCGGTGTCAAATAATCAGAAGTGTTAGCCAATGGTCTGC 2247
Query 2239 TGGGACGAGCCAGCCTGAAGATAGCATTCATAGAGCTTATTGTTCGCTTATCCAGAACGC 2298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 TGGGACGAGCCAGTCTGAAGATAGCATTCATAGAGCTTATTGTTCGCTTATCCAGAACGC 2307
Query 2299 TGAACATTTTATCTACATAGAGAACCAATTCTTCATCTCCGGGCTAGAAAAAGAGGACAC 2358
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2308 TGAACATTTTATCTACATAGAGAACCAATTCTTTATCTCCGGGCTAGAAAAAGATGACAC 2367
Query 2359 GATCCTAAACCGCGTTCTAGAAGCGTTATACAGACGCATTCTGAAGGCTCATGAAGAGAA 2418
||| || ||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 2368 GATTCTTAACCGCGTTCTCGAAACGTTATACAGGCGCATTCTGAAGGCTCATGAACAGAA 2427
Query 2419 CAAGTGCTTCCGCGTTGTGATCGTTATTCCGCTACTCCCTGGATTTCAGGGAGGTATTGA 2478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2428 CAAGTGCTTCCGCGTTGTGATCGTTATTCCGCTTCTCCCTGGATTTCAGGGAGGTATTGA 2487
Query 2479 TGACTTCGGAGCAGCCACGGTTCGAGCACTGATGCATTGGCAATACCGTACGATCTCTAG 2538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2488 TGACTTCGGAGCAGCCACGGTTCGAGCACTGATGCATTGGCAATACCGTACGATCTCTAG 2547
Query 2539 AGAAGGAACTTCGATTCTTGACAACCTTAACGCTTTGCTCGGTCCCAAGACGCAAGATTA 2598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2548 AGAACGAACTTCGATTCTTGACAACCTTAACGCTTTGCTCGGTCCCAAGACGCAAGAATA 2607
Query 2599 CATCTCTTTCTATGGTTTGAGATCGTACGGACGGCTGTTTGAGGACGGTCCAATTGCCAC 2658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2608 TATCTCTTTCTATGGTTTGAGATCGTACGGACGGCTGTTTGAGGACGGTCCAATTGCCAC 2667
Query 2659 TAGCCAGATTTACGTGCATAGCAAGTTAATGATTGTTGATGACCGGATCGCAGTGATCGG 2718
|||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||
Sbjct 2668 TAGCCAGATTTACGTGCACAGCAAGCTAATGATTGTTGATGACCGGATTGCGGTGATCGG 2727
Query 2719 ATCTTCTAATATAAACGATAGGAGCTTACTAGGTTCACGAGACTCTGAGATCGGTGTTGT 2778
||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||
Sbjct 2728 ATCTTCTAATATAAACGATCGGAGCTTACTAGGCTCCCGAGACTCTGAGATCGGGGTTGT 2787
Query 2779 GATTGAAGACAAAGAATTCGTGGAATCTTCGATGAACGGAATGAAGTGGATGGCCGGGAA 2838
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2788 GATCGAAGACAAAGAATTCGTGGAATCTTCAATGAACGGAGTGAAGTGGATGGCCGGGAA 2847
Query 2839 GTTCTCTTACAGTCTTAGATGTTCCTTGTGGTCAGAGCATCTCGGCCTTCACGCCGGAGA 2898
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2848 ATTCTCTTACAGTCTTAGATGTTCCTTGTGGTCAGAGCATCTCGGCCTTCACCCCGGAGA 2907
Query 2899 GATTCAGAAGATCGAAGATCCAATCAAAGATGCAACATACAAAGACTTATGGATGGCAAC 2958
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2908 GATGCAGAAGATCGAAGATCCAATCAAAGATGCAACATACAAGGACTTGTGGATGGCAAC 2967
Query 2959 AGCTAAGAAAAACACGGACATCTACAACCAAGTCTTCTCGTGCATCCCGAATGAACATAT 3018
|||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2968 GGCTAAGAAGAACACCGATATCTACGACCAAGTCTTCTCCTGCATCCCGAATGAACATAT 3027
Query 3019 ACGCTCAAGAGCTGCATTGAGACACAATATGGCTCTTTGTAAAGACAAGTTGGGTCACAC 3078
||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 3028 ACGCTCAAGAGCTGCATTGAGACACAATATGTCTATTTGTAAAGACAAGTTGGGTCATAC 3087
Query 3079 TACGATCGACCTTGGCATTGCACCGGAGAGGCTAGAATCATGCGGCAGCGACTCGTGGGA 3138
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 3088 TACGATCGACCTTGGCATTGCACCAGAGAGGCTAGATTCATGCGGCAGCGACTCGTGGGA 3147
Query 3139 GATTCTGAAGGAGACAAGAGGGAACCTTGTGTGCTTCCCATTACAGTTCATGTGTGATCA 3198
||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 3148 GATGCTGAAGGAGACAAGAGGGCACCTTGTGTGTTTCCCATTACAGTTTATGTGTGATCA 3207
Query 3199 AGAAGATCTCAGACCAGGTTT-CAACGAATCTGAGTTCTACACTGCTCCTCAAGTCTTCC 3257
||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 3208 AGAAGATCTCAGACC-GGTTTTCAACGAATCCGAGTTCTACACTGCTCCTCAAGTCTTCC 3266
Query 3258 ACTAACCACTATTTATTGTACGCCCAGTTCTCTTTAATCAGTTAATAGAGTACCTAAGCT 3317
||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3267 ACTGACCACTATTTAT-GTACGCCCAGTTCTCTTTAAACAGTTAATAGAGTACCTAAGCT 3325
Query 3318 CACACGTTACTTATGTATAGAGATGTTAGTTATATAGAAAGAAGAAATTCATTTGATTGC 3377
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3326 CACACGTTACTTTTGTATAGAGATGTTAGTTATATAGAAAGAGGAAATTCATTTGATTGC 3385
Query 3378 TTCCTAGGTTCGCAGAGGTATGTGTGTGTATAGTATACACTTCTTGTAAATCATAATGTT 3437
||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 3386 TTCCTAGATTCGCAGAGGTATGTGTGTGTATATTATACACTTCTTGTAAATAATAATGTT 3445
Query 3438 TATGTGCCTCAAGCTGTACAATACATCTTCAATTGCGGATA 3478
||||| |||||||||||||||||||||||||||||||||||
Sbjct 3446 TATGTACCTCAAGCTGTACAATACATCTTCAATTGCGGATA 3486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132364238894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5