BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05640.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2 1888 0.0
> Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2
Length=1479
Score = 1888 bits (1022), Expect = 0.0
Identities = 1194/1277 (94%), Gaps = 12/1277 (1%)
Strand=Plus/Plus
Query 399 TCTCTCT-AGTTCAAGATCATATGATATTTTCACTTTCTGGACAAAATGGGACATTTCTC 457
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 208 TCTATCTGAGTTCAAGATCATATGATATTTTCACCTTCTGGACAAAATGGGACATTTCTC 267
Query 458 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCGAAGAACATCAACAG 517
||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||
Sbjct 268 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCCAAG-A-A-CAACAA 324
Query 518 CAGCAAAAGCTACGCTAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAGAAGGA 577
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 325 CAGCAAAAGCTACGCGAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAAAAGGA 384
Query 578 ACTT-ATTTTGAGATCCTCTGGTTGCATTAATGCAGATGGATCTAATAACTTGGCTTCTG 636
| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 385 A-TTGATTCTGAGATCCTCTGGTTGCATTAATGCAGATGGTTCTAATAACTTGGCTTCTG 443
Query 637 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTGTGCCATCGTCTGGGAGGGAT 696
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 444 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTCTGCCATCGTCTGGGAGGGAT 503
Query 697 ATGGGTGTCAAGAAGACATGATATTCTGTGGGATATTCGATGGACATGGTCCCTGGGGAC 756
||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 504 TTGGATGTCAAGAAGACATGATCTTCTGTGGGATATTTGATGGACACGGTCCCTGGGGAC 563
Query 757 ACTTTGTTTCTAAACAAGTCAGAAACTCAATGCCTATATCTTTGCTCTGTAACTGGAAAG 816
|||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 564 ACTTTGTTTCTAAACAAGTCAGGAACTCAATGCCTCTATCTTTGCTCTGCAACTGGAAAC 623
Query 817 AGACTCTTTCTCAGACCACAATAGCAGAACCCGATAAAGAGCTACAGCGGTTTGCAATCT 876
|||||||||||||||||||| ||||||| ||||||||| ||||||||||||| || ||||
Sbjct 624 AGACTCTTTCTCAGACCACATTAGCAGAGCCCGATAAAAAGCTACAGCGGTTCGCCATCT 683
Query 877 GGAAATACTCATTCCTCAAAACCTGTGAAGCTGTTGATCTGGAGCTTGAGCATCACCGAA 936
|||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 684 GGAAATACTCATACCTCAAAACATGTGAAGCTGTCGATCGGGAGCTTGAGCATCACCGAA 743
Query 937 AGATAGATTCTTTCAACAGCGGTACGACCGCTCTAACCATTGTGAGACAGGGTGATGTTA 996
|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 744 AGATCGATTCTTTCAACAGCGGTACGACTGCTCTAACCGTTGTGAGACAGGGTGATGTTA 803
Query 997 TTTATATAGCAAACGTCGGGGATTCACGTGCGGTATTGGCCACAGTTTCAGACGAAGGAA 1056
|||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 804 TTTATATAGCAAACGTTGGGGATTCACGCGCAGTATTAGCCACGGTTTCAGACGAAGGAA 863
Query 1057 GCTTGGTCGCGGTTCAGCTCACCGTAGATTTCAAGCCAAACCTGCCTCAGGAGGAAGAGC 1116
||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 864 GCTTGGTTGCGGTTCAGCTCACTGTAGATTTCAAACCAAACCTGCCGCAGGAGGAAGAGC 923
Query 1117 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAAGATGAGCCAGGGGTCCACCGTG 1176
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 924 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAGGACGAGCCAGGGGTCCACCGTG 983
Query 1177 TATGGCAACCAGTAGATGAATCTCCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTATT 1236
| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 984 TGTGGCAACCAGAAGAGGAATCTCCAGGACTCGCAATGTCAAGAGCATTCGGAGACTATT 1043
Query 1237 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1103
Query 1297 GAGACCAGTTTATAATCTTGGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GAGACCAGTTTATAATCTTAGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1163
Query 1357 CCATAGATATTGTTTCCTCGACGGCGGAGCGGGCAAAAGCTGCCAAGCGACTGGTACAGC 1416
|||||| ||||||||| ||||| || |||||| |||| |||||||| |||||||||||||
Sbjct 1164 CCATAGCTATTGTTTCGTCGACCGCAGAGCGGCCAAAGGCTGCCAAACGACTGGTACAGC 1223
Query 1417 AAGCAGTTAGGGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1476
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AAGCGGTTAGAGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1283
Query 1477 TGTGCCTCTTCTTCCATTCTTCATCGTCGTCGCCATCTCTATAGCAACATCTTCTCCATG 1536
|||||||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||
Sbjct 1284 TGTGCCTCTTTTTCCATTCCTCATCTTCGTCGCCATCACTATAGCAACATCTTCACCATG 1343
Query 1537 CCACGACCTGCAA---GTAGGTAC-TAGTACTTTTGGACCGG-GCAAGAAAAGAAAAAAT 1591
||||||| || || ||| ||| || || ||||||||||| | |||||||| ||||||
Sbjct 1344 CCACGACTTGAAACTTGTAAGTAGGTACTAGTTTTGGACCGGTG-AAGAAAAGGAAAAAT 1402
Query 1592 GCTGCAATGTAGATAGACTTGCGTAAAATCGCATTGAATATTACTTTCTTGCCAAACCAG 1651
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1403 GCTGCAATGTAAATAGACTTGCGTAAACTCGCATTGAATATTACTTTCTTGCCAAACCAG 1462
Query 1652 AGTCCTATCACAATCTA 1668
|||||||| ||||||||
Sbjct 1463 AGTCCTATAACAATCTA 1479
Score = 235 bits (127), Expect = 8e-61
Identities = 200/232 (86%), Gaps = 18/232 (8%)
Strand=Plus/Plus
Query 134 CATAAATAAATAAATTTAGAGAAATATCTAAGTTTGGTTCTTCCCTGTGTCTACCCACCG 193
|||||||||||||| ||||||||||||||| |||| ||||||||||||| | |||
Sbjct 1 CATAAATAAATAAAAGTAGAGAAATATCTAATTTTGTTTCTTCCCTGTGT-T---TGCCG 56
Query 194 TGATCATCATAAAATGGATTGTGATTTCTGATTTGTGAGTCTATCTTTCTCTACTCCATT 253
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 57 -GA--ATCATTAAATGGATTGTGATTTCTGATTTGTGAGTCAATCTTTCTCTACTCCATT 113
Query 254 AGCTTCCTCTCC-CTTGGATGGTTACGTCACTTTCTCCGAGCTTACGTCATCTATATCCG 312
|| ||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 114 AGTTTCCTCTCCGTTTGGGT-ATTACGTCACTTTCTCCGAGCTTACGTCATCTATGTCCG 172
Query 313 GTCTTCACTTCTTTTTCCTTCCATTCCTCAGCAGCATTGCGTAATCTATCTG 364
||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 173 GTCGTCACTTCTTTTTCCTT--A-------GCAGCATTGCGTAATCTATCTG 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5