BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05660.1
Length=3043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1 4013 0.0
Ahg928821 jgi|Araly1|928821|scaffold_301278.1 182 2e-44
> Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1
Length=2832
Score = 4013 bits (2173), Expect = 0.0
Identities = 2502/2661 (94%), Gaps = 22/2661 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCTCATTCCTATTActttttattttctcttcttgttcttttctaattttcgaggt 60
||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |
Sbjct 1 ATGAGTCTCATTCCTATTACTATTTATTTTCTCTTCTTGTTCTTTTATATTTTTCGAGAT 60
Query 61 gtttttGCTGTTCCTAATATACACTTATGTCATTTCGAACAAAGAGATGCACTTCTCGAG 120
||||| ||||||||||||| |||||||||| | |||||||||| ||||||||||||||
Sbjct 61 GTTTTAGCTGTTCCTAATAGACACTTATGTGACCCCGAACAAAGAAATGCACTTCTCGAG 120
Query 121 TTCAAGAACGAGTTTAAGATTAAGAAGCCTTGTTTTGGTTGTCCAAGTCCTCTGAAGACA 180
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 121 TTCAAGAAGGAGTTTAAGATTAAGAAGCCATGTTTTGGTTGTCCAAGTCCTCCGAAGACA 180
Query 181 AAGTCATGGGAGAATGGCAGCGACTGTTGTCATTGGGATGGTATTACTTGCGATGCTAAG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTCATGGGGGAATGGCAGCGACTGTTGTCATTGGGATGGTATTACTTGCGATGCTAAG 240
Query 241 ACCGGGGAAGTAATCGAGATAGACCTTATGTGCAGCTGCCTCCATGGCTGGTTTCATTCC 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCGGGGAAGTAATCGAGCTAGACCTTATGTGCAGCTGCCTCCATGGCTGGTTTCATTCC 300
Query 301 AACAGTAATCTTTCTATGCTTCAAAA-TTTCCATTTTCTAACCACTCTAGACCTTTCATA 359
|||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||
Sbjct 301 AACAGTAATCTTTCTATGCTTCAAAACTTT-CGTTTTCTTACCACTCTAGACCTTTCATA 359
Query 360 TAATCATTTGAGTGGTCAAATCTCATCTTCTATTGGAAACCTTTCTCATCTCACCACTCT 419
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 360 TAATCATTTGAGTGGTCAAATCCCATCTTCGATTGGAAACCTTTCTCATCTCACCTCTCT 419
Query 420 CGACCTTTCTGGAAATAACTTCAGTGGTTGGATTCCTTCTTCCCTTGGAAACCTTTTTCA 479
| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CTACCTTTCTGGAAATTATTTCAGTGGTTGGATTCCTTCTTCACTTGGAAACCTTTTTCA 479
Query 480 CCTCACCTCTCTCCACCTCTATGATAACAATTTTGGTGGTGAAATCCCATCTTCACTTGG 539
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 480 CCTCACCTCTCTCCGCCTCTATGATAACAATTTTGTTGGGGAAATCCCATCTTCACTTGG 539
Query 540 AAATCTGTCGTATCTCACCTTTCTCGACCTATCTACTAACAATTTTGTTGGTGAAATCCC 599
||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 540 AAACCTGTCTTATCTCACCTTTCTCGACCTTTCTAGTAACAATTTCGTTGGTGAAATCCC 599
Query 600 TTCTTCTTTTGGCAGTTTGAACCAATTGTCTATTTTACGTCTTGATAATAATAAGCTTAG 659
|||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||
Sbjct 600 ATCTTCTTTTGGCAGTTTGAACCAATTGTCTGTCTTACGTGTTGATAATAATAAACTTAG 659
Query 660 TGGTAACCTCCCACTTGAAGTAATCAATCTTACAAAGTTGTCAGAGATATCACTCTCT-C 718
|||||||||||||| |||| ||||||||||||||||||||||||| |||||||| | | |
Sbjct 660 TGGTAACCTCCCACATGAACTAATCAATCTTACAAAGTTGTCAGAAATATCACT-TTTAC 718
Query 719 ACAATCAGTTCACAGGCACGCTTCCTCCTAACATCACTTCACTCTCCAT-CTTGGAGTCC 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 719 ACAATCAGTTCACAGGCACGCTTCCTCCTAACATCACTTCACTCTCCATCCTT-GAGTCC 777
Query 778 TTTTCGGCAAGTGGAAACAATTTCGTTGGAACTATCCCTTCCTCTCTCTTCACCATTCCT 837
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 778 TTTTCGGCAAGTGGAAACAATTTCGTTGGAACTATCCCTTCTTCTCTCTTCACCATTCCT 837
Query 838 TCTATAACTCTTAtttttttGGACAATAACCAACTCAGCGGCACTCTTGAGTTTGGGAAT 897
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 TCTATAACTCTTATTTTTTTGGACAATAACCAACTCAACGGCACTCTTGAGTTTGGGAAT 897
Query 898 ATATCTTCACCGTCTAATTTACTAGTGTTACAACTTGGCGGTAACAACTTGAGAGGTCCA 957
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATATCTTCACCATCTAATTTACTAGTGTTACAACTTGGCGGTAACAACTTGAGAGGTCCA 957
Query 958 ATCCCTACATCTATTTCCAGATTAGTCAACCTTAGGACACTTGACCTTTCCCATTTCAAC 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATCCCTATATCTATTTCCAGATTAGTCAACCTTAGGACACTTGACCTTTCCCATTTCAAC 1017
Query 1018 ATCCAAGG-CCAAGTTGACTTTAATATCTTCTCGCATCTCAAGTTGCTAGGAAACCTTTA 1076
|||||||| || |||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1018 ATCCAAGGTCC-AGTTGACTTTAATATCTTCTCGCATCTCAAATTGCTTGGAAATCTTTA 1076
Query 1077 CCTATCCCATTCCAACACCACCACTACAATTGACTTGAATGCAGTCTTATCATGTTTCAA 1136
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 CCTATCTCATTCGAACACCACCACTACAATCGACTTGAATGCAGTCTTATCATGTTTCAA 1136
Query 1137 GATGCTCATTTCATTGGATCTCTCAGGCAACCATGTTTTAGTCACAAACAAAAGTTCAGT 1196
|||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||
Sbjct 1137 GATGCTCATTTCATTGGATCTCTCAGGCAACCATGTTTCAGCCACAAACAACATTTCAGT 1196
Query 1197 TTCTGACCCTCCTTTGGGATTGATAGGCTCTTTGAACTTATCAGGATGCGGTATCACCGA 1256
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1197 TTCTGACCCTCCTTCGGGATTGATAGGCTCTTTGAACTTGTCAGGATGTGGTATCACCGA 1256
Query 1257 GTTTCCAGATATCCTAAGAACGCAACGCCAAATGAGGACGCTAGACATTTCCAACAACAA 1316
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GTTTCCAGAGATCCTAAGAACGCAACGCCAAATGAGGACGCTAGACATTTCCAACAACAA 1316
Query 1317 AATCAAAGGCCAAGTGCCTAGCTGGTTACTATTACAGTTGGAGTACATGCATATCTCCAA 1376
||||||||| ||||||||| ||||||||||| |||||||||| |||||| |||| |||||
Sbjct 1317 AATCAAAGGTCAAGTGCCTGGCTGGTTACTACTACAGTTGGATTACATGTATATTTCCAA 1376
Query 1377 CAACAATTTCATCGGTTTCGAAAGATCAACGAAACTTGAAAAAACCGTAGTCCCAAAACC 1436
|||||||||| |||||||||||||||||||||||| |||| || || | ||||| |||||
Sbjct 1377 CAACAATTTCGTCGGTTTCGAAAGATCAACGAAACCTGAAGAATCCTTTGTCCCGAAACC 1436
Query 1437 ATCTATGAAGCACTTTTTTGGCTCCAATAACAATTTCAGTGGAAAGATTCCATCTTTCAT 1496
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1437 ATCTATGAAGCACTTGTTTGGCTCCAACAACAATTTCAATGGAAAGATTCCATCTTTCAT 1496
Query 1497 ATGCTCGTTGCGCTCTCTAATCATTCTCGATTTATCTAACAACAACTTCAGTGGTGCAAT 1556
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1497 CTGCTCGTTGCACTCTCTAATCATTCTCGATTTATCTAACAACAACTTCAGTGGTTCAAT 1556
Query 1557 CCCTCCTTGTGTGGGAAAATTCAAGAGTACTCTTTCAGATCTTAACCTACGTCGGAATCG 1616
|||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1557 CCCTCCTTGTATGGGAAAATTCAAGAGTGCTCTTTCAGATCTAAACCTACGTCGGAATCG 1616
Query 1617 TCTTAGTGGAAGTCTTCCAAAGACTATAATAAAAAGTTTAAGGTCTCTTGATGTGAGTCA 1676
||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||
Sbjct 1617 TCTTAGTGGAAGTCTTCCAAAGAATACAATGAAAAGTTTAAGGTCGCTTGATGTGAGTCA 1676
Query 1677 TAACGAACTGGAGGGAAAGCTTCCAAGATCTTTGATCCACTTCTCTACTCTTGAAGTTTT 1736
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1677 TAACGAACTGGAGGGAAAGCTTCCAAGATCTCTGATCCACTTCTCTACTCTTGAAGTTTT 1736
Query 1737 GAATGTAG-AAAGCAACAGAATCAACGACACGTTTCCGTTCTGGTTGAGTTCTCTAAAAA 1795
|||||| | ||| ||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1737 GAATGTGGGAAA-CAACAGAATCAACGACACGTTTCCGTTCTGGTTGAGTACTCTTAAAA 1795
Query 1796 AGCTGCAAGTTCTTGTCTTACGCTCCAACGCATTTCACGGACGGATACACAAGACTCGGT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1796 AGCTGCAAGTTCTTGTCTTACGCTCCAACGCATTTCACGGACGGATACACAAGACTCACT 1855
Query 1856 TTCCTAAGTTGCGAATCATCGACATATCCCGTAATCACTTCAATGGGACATTGCCATCAG 1915
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 1856 TTCCTAAGTTGCGAATCATCGACATATCCCGTAATCAATTCAATGGAACATTGCCAACAG 1915
Query 1916 ATTGCTTTGTGGAGTGGACTGGGATGCACTCACTTGaaaaaaaTGAAGATCGGTTTAACG 1975
||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||||||
Sbjct 1916 ATTGCTTTGTGGACTGGACTGCAATGTACTCACTTGGCAAAAATGAAGACCGGTTTAACG 1975
Query 1976 AAAAGTACATGGGATCAGGCTATTACCATGATTCAATGGTTCTGATGAATAAAGGCT-TA 2034
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||
Sbjct 1976 AAAAGTACATGGGATCAGGCTATTACCATGATTCAGTGGTTTTGATGAATAAAGG-TGTA 2034
Query 2035 GAGATGGAGCTGGTACGTATCCTAAAAATCTATACAGCTCTCGACTTCTCTGGAAACAAA 2094
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 2035 GAGATGGAGCTGGTACGTATCCTAAAAATCTACACAGCTCTCGACTTTTCTGAAAACAAA 2094
Query 2095 TTTGAAGGAGAGATTCCAAGATCCATCGGTCTATTGAAAGAACTTCATATCCTCAACTTG 2154
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2095 TTTGAAGGAGAGATTCCAAGATCCATGGGTCTATTGAAAGAGCTTCATATCCTCAACTTG 2154
Query 2155 TCAAGCAATGGTTTCACCGGCCACATCCCATCATCTATGGGGAACCTGAGAGAGCTCGAG 2214
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 2155 TCAAGCAATGGTTTCACCGGACACATCCCATCATCTATGGCGAATTTGAGAGAGCTCGAG 2214
Query 2215 TCACTGGATGTTTCCCGAAACAAGCTTTCAGGAGAAATTCC-ACAAGAACTAGGGAACCT 2273
|||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2215 TCACTGGATGTTTCCCAAAACAAGCTTTCAGGAGAAATTCCGA-AAGAACTAGGGAACCT 2273
Query 2274 CTCGTACCTTGCGTACATGAACTTTTCTCATAACCAGCTTGTCGGTCAAGTACCAGGAGG 2333
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2274 CTCGTACCTTGCCTACATGAACTTTTCTCATAACCAGCTTGTAGGTCCAGTACCAGGAGG 2333
Query 2334 CACCCAGTTTCGAACGCAATCCGCTTCGTCTTTTGAAGAAAACCTTGGACTTTGTGGTCG 2393
||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2334 CACTCAGTTTCAAACGCAATCTGCTTCGTCTTTTGAAGAAAACCTTGGGCTTTGTGGTCG 2393
Query 2394 TCCTCTCGAAGAATGTAGAGTTGTCCATGAGCCGACGCCTTCAGGGGAATCAGA-AACAT 2452
|||||| ||||||||| ||||||||||||||||||||||||||| | ||||||| |||
Sbjct 2394 TCCTCTAGAAGAATGTGGAGTTGTCCATGAGCCGACGCCTTCAGAGCAATCAGATAAC-- 2451
Query 2453 TGGAATCAGAACAAGTCTTGAGTTGGATTGCAGCTGCCATAGGGTTCACACCTGGTATCG 2512
| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2452 -G-AAGAAGAACAAGTCTTGAGCTGGATTGCAGCTGCCATAGGGTTCACACCTGGTATCG 2509
Query 2513 TGCTTGGATTGACCATTGGGCACATCGTGCTTTCCTCCAAACCGCGTTGGTTCTTCAAGG 2572
||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||| |||||
Sbjct 2510 TGCTTGGATTGACCATTGGACACATGGTGATTTCCTCCAAACCGCATTGGTTCTCCAAGG 2569
Query 2573 TGTTGT---ACATCAACAACAGTCGTAGACGCAGACGAACTCGTTCTGAGAAATCCTAAA 2629
|| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2570 TGGTGTTCTACATCAACAACAGTCATAGACGCAGACGAACTCGTTCTGAGAAACCCTAAA 2629
Query 2630 TCACGGAATTGAAGACGTTCG 2650
||| |||||||||||||||||
Sbjct 2630 TCAGGGAATTGAAGACGTTCG 2650
Score = 217 bits (117), Expect = 5e-55
Identities = 154/171 (90%), Gaps = 5/171 (3%)
Strand=Plus/Plus
Query 2683 GAGGATCGTTATGTGAATTCGA-AATTGGG-CTGATAAAATGGGCTTGCTTACATAATTT 2740
||||||||||| |||||||| | ||||||| || |||||||||||||||||| ||| ||
Sbjct 2650 GAGGATCGTTAGGTGAATTC-AGAATTGGGCCT-TTAAAATGGGCTTGCTTACTTAAGTT 2707
Query 2741 AGGCCCATTAATGAAAGACGTCGGCGAAGAAAGCAACGTTGTACGGAGAAAGTAATAATT 2800
|||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 2708 AGGCCCATCAATGAAAGACGTCGGCGAAGAAAGCAACATCGTACGGAGAGTGTAATAATG 2767
Query 2801 ACAAGAAGAAGACGAAGACATTCATGGAC-ATTAATCATGGAAGGTAGCGA 2850
||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 2768 ACAAGAAGAAGACGAAGACATTCATAGACCATAAATCATGGAAGGTAGCGA 2818
> Ahg928821 jgi|Araly1|928821|scaffold_301278.1
Length=419
Score = 182 bits (98), Expect = 2e-44
Identities = 229/292 (78%), Gaps = 9/292 (3%)
Strand=Plus/Plus
Query 3 GAGTCTCATTCCTATTActttttattttctcttcttgttcttttctaattttcgaggtgt 62
|||| ||| |||||||||| ||| |||||| ||||| || ||| || |||||||| |||
Sbjct 44 GAGTATCACTCCTATTACTCTTTCTTTTCTTTTCTTACTCATTTGTATTTTTCGAGATGT 103
Query 63 ttttGCTGTTCCTAATATACACTTATGTCATTTCGAACAAAGAGATGCACTTCTCGAGTT 122
||||| ||||||| || |||||| |||| | ||||||||| |||||||||||||||||
Sbjct 104 GTTTGCGGTTCCTACTAAACACTTGTGTCGTCCCGAACAAAGGGATGCACTTCTCGAGTT 163
Query 123 CAAGAACGAGTTTAAGATTAAGAAGCCTTGTT-TTGGTTGTCCAAG--TCC-TCTGAAGA 178
||||||||||||||||||| ||||||| || || ||| | | | | || ||||
Sbjct 164 CAAGAACGAGTTTAAGATTGGGAAGCCTA-TTCTTCAATGTACTGGCGTACATCCAAAGA 222
Query 179 CAAAGTCATGGGAG-AATGGCAGCGACTGTTGTCATTGGGATGGTATTACTTGCGATGCT 237
| |||||||| | ||| |||||| |||||| ||||||| ||||| || ||| ||||
Sbjct 223 CGGAGTCATGG-ACCAATACCAGCGATTGTTGTAATTGGGAGGGTATCACGTGCAATGCC 281
Query 238 AAGACCGGGGAAGTAATCGAGATAGACCTTATGT-GCAGCTGCCTCCATGGC 288
| | |||| ||| || ||| ||||||||| || |||| ||| ||||||||
Sbjct 282 ATCTCTGGGGTAGTGATTGAGCTAGACCTTA-GTTGCAGTTGCTTCCATGGC 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114918269165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5