BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05670.1
Length=3090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477858 jgi|Araly1|477858|fgenesh2_kg.3__559__AT3G05670.1 3997 0.0
> Ahg477858 jgi|Araly1|477858|fgenesh2_kg.3__559__AT3G05670.1
Length=2911
Score = 3997 bits (2164), Expect = 0.0
Identities = 2540/2714 (94%), Gaps = 55/2714 (2%)
Strand=Plus/Plus
Query 292 TGAGGAGCATATGGGAAAGAGAAACACGTCTTGGGCTAGAAATTCTAATAGAAAGGTTAG 351
||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||
Sbjct 245 TGAGGAGCATATGGGAAAGAGAAACACTTTTTGGGCAAGAAATTCTAATAGCAAGGTTAG 304
Query 352 ATCTAAGGATAAGGGTTCAGATGAGTCAGATGAGGATTATGTGATTTCCGACGAGGATGA 411
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 305 ATCTAAGGATAAGGGTTCTGATGAATCTGATGAGGATTATGTGATTTCCGACGAGGATGA 364
Query 412 AGAAGAGTCTGAGGCTGATCTCAAGGAGGAGTATGCCTCATCTGTTGACGGTGAGCCATC 471
|||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 365 AGAAGAGTCTGAGGCTGATCTCAAGGAGGAGTATGCCTCATCCGTTGAC---G-G----- 415
Query 472 CTTTGATGGTTTTAATGGGTCTGATGCGGTGGAGGATGAGGAATTAGATGAAGTGGAAGA 531
||| | | ||||||||||||| ||||| | |||||| |||||||| ||||||||
Sbjct 416 -TTT--T-G-----ATGGGTCTGATGCAGTGGAAGCTGAGGAGTTAGATGAGGTGGAAGA 466
Query 532 GGAAGATGTGATGCTGAGGAATGTTGAATGGCCAAAAGTGAAGACTGGTCCTCGTGGTAA 591
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 467 GGAAGATGTGATGCTGAGGAATGTTGAGTGGCCAAAAGTGAAAACTGGTCCTCGTGGTAA 526
Query 592 TCGAAAAATCACGGGATGTAAGTCAAGAAAGACGAACCAGGTGGTTGTGTCTGACAACGA 651
|| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 527 CCGGAAAATCACGGGATGTAAGTCAAGAAAGATGAACCA---AGTTGTGTCTGACAACGA 583
Query 652 GGATGTGGATCTCGATGATGCGGATGATGAAGATGATGAGATAAGGAATTCAAGGAATGC 711
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 584 GGATGTGGATCTTGATGATGCGGATGATGAAGAGGAGGAGATAAGGAATTCAAGGAAGGC 643
Query 712 TGTTGGGAAAAG-TGGGTCTTTGGATGGAGAGAAACACCA-AAGGATAGGTTTAGGAAAG 769
|||| ||||||| |||||||||||||||||||||||| || || |||||||||||||||
Sbjct 644 TGTT-GGAAAAGTTGGGTCTTTGGATGGAGAGAAACA-CAGTAGAATAGGTTTAGGAAAG 701
Query 770 CGAAGGAGAGTTTTCTATGAGATAGAGGATGAAGATGGAGACTATCCAGAGGAGGATGGT 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CGAAGGAGAGTTTTCTATGAGATAGAGGATGAAGATGGAGACTATCCAGAGGAGGATGGC 761
Query 830 GATGAAGAGGAAGAGAGGGATGTGGAAAATGTGGATTCAAATTCTTTGCATGATGGTGAA 889
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 762 GAGGAAGAGGAAGAGAGGGATGTGGAAAATGTGGATTTAAATTCTTTGCATGATGGTGAA 821
Query 890 GACGGGAAGATGGCATTGGAAGAGCAGGACAATGTGTCACACGAGACAGAAAAGGAAgat 949
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GACGGGATGATGGCATTGGAAGAGCAGGACAATGTGTCACACGAGACAGAAAAGGAAGAT 881
Query 950 gatggagattatgaggatgaggatgaggatgatgatggcgatgaagattttaccgcagat 1009
|||||||| | | |||||||| || | |||||||||||||||||||||||||||
Sbjct 882 GATGGAGA-T-T----ATGAGGAT---GA-G--GATGGCGATGAAGATTTTACCGCAGAT 929
Query 1010 gaagatgTCTCATTAGATGAGGAAGAGGAGGAAGAAATC-ATTGCATGTAACAAAAATG- 1067
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 930 GAAGATGTCTCATTAGATGAGGAAGAGGAGGAAGAAA-CAATTGCATGTAACAAAAA-GT 987
Query 1068 CACTGAAGGTTTGTAAGGGAAACAAGCGAAAGCGAAGATCTGGAGAAGGGCGTAAAAGAA 1127
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 988 CACTGAAGGTTTGTAAGAAAAACAAGCGAAAGCGAAGATCTGGAGAAGGTCGTAAAAGAA 1047
Query 1128 GGAAGAAATGCTCTGTTGCAAAAACCCGTTTAACAAGGGGAAGAAAGAGACGTGTGAGAA 1187
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 1048 GGAAGAAATGCTCTGTTGCAAAAACCCGTTTAACGAGGGGAAGAAAGAGACGTGGGAAAA 1107
Query 1188 ACACAAAGAAAGGAGTTGATGAAGATGATGATGATTTTGTAGATGACTGCTTACCTGCAA 1247
||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1108 ACACAAACAGAGGAGTTGATGAAGATGATGATGATTTTGTAGATGACTGCCTACCTGCAA 1167
Query 1248 GAAAGAAGGCGAAGACAAAGTCATCAAGGCCAAGGCCAAGGCGTCGGTGTACCGTTCCAT 1307
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 1168 GAAAGAAGGCGAAGACAAAGTCAT------CAAGGCCAAGGCGTCGGCATACCGTGCCAT 1221
Query 1308 CAGATTCAGACGTTGCATCGTCTGGAGAATCCGACTATGAGTATACAATCTCGGAGGAGG 1367
||||||||||| ||||||| |||| ||||||||| ||||| || ||||||||||||||||
Sbjct 1222 CAGATTCAGACATTGCATCCTCTGCAGAATCCGATTATGAATACACAATCTCGGAGGAGG 1281
Query 1368 AAAGAGAGCAGATAAGAGAAGCCGGTAGTTTGTTGAAAAGTAGTGTGAACCATGCATCAT 1427
|| |||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1282 AACGAGAGCAGATAATAGAAGCTGGTAGTTTGTTGAGAAGTAGTGTGAAGCATGCATCAT 1341
Query 1428 CTATAAGACAAACCACGGTCAATAAGGATTTGCCACAGCTTCGTAAGTCTCCTGTGAAGA 1487
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1342 CTATAAGACAAACCACAGTCAATAAGGATTTGCCTCAGCTTCGTAAACCTCCTGTGAAGA 1401
Query 1488 AAGGTGAAAAGAAGGTAGAGCTAGTGAAAAGAGATGTGATAAAAAACGTTTGTGGGATTT 1547
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AAGGTGAAAAGAAGGTAAAGCTAGTGAAAAGAGATGTGATAAAAAACGTTTGTGGGATTT 1461
Query 1548 GTCTGTCTGAGGAAGACATGCGGAGATTGAAGGGAACATTGGACTGCTGTAGCCATTACT 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GTCTGTCTGAGGAAGACATGCGGAGATTGAAGGGAACATTGGACTGCTGTAGCCATTACT 1521
Query 1608 TTTGTTTCACTTGCATAATGGAGTGGTCGAAAGTAGAATCTCGCTGCCCACTCTGCAAGC 1667
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1522 TTTGTTTCACTTGCATAATGGAGTGGTCAAAAGTAGAATCTCGCTGCCCGCTCTGCAAGC 1581
Query 1668 AGCGGTTCAGAACAATCAGTAAGCCTGCAAGATCTACACCTGGAGTAGATTTGAGAGAAG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 AGCGGTTCAGAACAATCAGTAAGCCTGCAAGATCTACACCTGGAGTAGATTTGAGAGAAG 1641
Query 1728 TTGTGATACCTGTACCTGAACGTGATCAGGTCTATCAACCTACTGAAGAAGAGTTGAGGA 1787
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 TTGTGATACCGGTACCTGAACGTGATCAGGTCTATCAACCTACTGAAGAAGAGTTGAGGA 1701
Query 1788 GTTATCTCGATCCCTATGAAAATATAATATGCACGGAATGTCACCAAGGTGATGATGATG 1847
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1702 GTTATCTTGATCCCTATGAAAATATAATATGCACTGAATGTCACCAAGGTGATGATGATG 1761
Query 1848 GGCTTATGTTGCTTTGTGATCTTTGTGATTCATCTGCCCATACGTACTGTGTTGGTCTTG 1907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1762 GGCTTATGTTGCTTTGTGATCTTTGTGATTCATCTGCCCATACGTACTGTGTTGGTCTCG 1821
Query 1908 GGAGGGAAGTACCTGAAGGAAACTGGTACTGTGAAGGTTGTAGACCCGTTGCACTTGGAT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 GGAGGGAAGTACCTGAAGGAAACTGGTACTGTGAAGGTTGTAGACCCGTTGCACTTGGAT 1881
Query 1968 CAGCTAGTTCCCAAACGCATATTATATCCGAGCAACAAAGGGGTAGTGGCTTTTACAGTA 2027
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1882 CAGCTAGTTCCCAAACGCATAATACATCCGAGCAACAAAGGGTTAGTGGCTTTTACAGTA 1941
Query 2028 GACCGTCACCTCTTGTAGTTTCAGGGCAATATCAAGATGTGTCTTTAATAGTCTCCCCAC 2087
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1942 GACCATCACCTCTTGTAGTTTCAGGGCAATATCAAGATGCGTCTTTGCTAGTCTCCCCAC 2001
Query 2088 GTACACCATTTTTCAATGGAGAGAACCTATTTTCTCCAAGGATTCCTAATGGTGATGCTC 2147
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2002 GTACACCATTTTTCAATGGAGAGAACCTATTTTCTCCAAGGCTTCCTAATGGTGATGTTC 2061
Query 2148 AAGGTTCTTCTCCATCCGGCTTAGGGGCAACCACATTATCCAGAAGAAGGACGCTTCACA 2207
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2062 AAGGTTCTTCTCCATCCGGCTTAGGGGCAACCACATTATCAAGTAGAAGGACGCTTCACA 2121
Query 2208 GACACATACAAAATATTATCAACGGTGATAGACTTATTAATATGGGTGCTAGAACTGGTG 2267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2122 GACACATACAAAATATTATCAACAGTGATAGACTTATTAATATGGGTGCTAGAACTGGTG 2181
Query 2268 GAACATCGAGTGATGGTTTCGTGACTACACAAATAGGTCATGGCAGAACAATCGACCCAT 2327
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 2182 GAACATCGAGTGATGGTTTTGTGACTACACAAGTAGGTCATGGCAGAACAATCGACCCGT 2241
Query 2328 CTCAGCCTGTAGCGAGCCAAGAAACAGG-GATATCGTTGTATGCAATCTCTGAGGAAAGA 2386
||||||||| ||||||||||| |||||| | | || |||||| |||||||||||||||||
Sbjct 2242 CTCAGCCTGCAGCGAGCCAAGCAACAGGTG-TGTCATTGTATACAATCTCTGAGGAAAGA 2300
Query 2387 CTACCCAACAACAATTCATTGATTTCTGCCCATGACCCTGAGCTTTTGTCTCCAAAGTTA 2446
|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2301 CTACCCGACAACAGTTCATTGATTTCTGCCCATAACCCTGAGCTTTTGTCTCCAAAGTTA 2360
Query 2447 GATGAATTTGGAAGTGAAGAAGCATTCAGACGTTTGTCTAATAATACATTTCTTGGTGAG 2506
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 GATGAATTTGGAAGCCAAGAAGCATTCAGACGTTTGTCTAATAATACATTTCTTGGTGAG 2420
Query 2507 CGACCTATCGATTTAGGATTCCATCATGGACTGGCTCAGGGTGATCCCTTGGTTAGTAAT 2566
|| ||||||||||||||||| |||||| ||||||||||||||||||||| || |||||
Sbjct 2421 CGGCCTATCGATTTAGGATTATGTCATGGGCTGGCTCAGGGTGATCCCTTGTTTGGTAAT 2480
Query 2567 CAACAACGTCTACACAGCCACATGCCAAACACAATGTCTTCCATGGCAGGAGAACGACTG 2626
||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2481 CAACAACATCTTCACAGCTACATGCCAAACATAATGTCTTCCATGGCAGGAGAACGACTG 2540
Query 2627 CAAGAAAGAGTTAAAGCCCATCTCAAAAACTTGTCCAGTCAAAACGACTTAGGTCAAACC 2686
| | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2541 CCACAAAGAGTTAAAGCGCATCTCAAAAACTTGTCCAGTCAAATCGACTTAGGTCAAACC 2600
Query 2687 ACTTTCGACGAGATTTCCACGTGCTCAATACACACGATACTGGCAGCTTGTGGGCTTGAA 2746
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2601 ACTTTCGACGAAATTTCCACGTGCTCAATGCACACGATACTGGCAGCTTGTGGACTTGAA 2660
Query 2747 CACGAGAGCAGTGAAGTCCATCTTGTTCCGCCACCAGTGACGTGTACTCACCATCATATG 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 CACGAGAGCAGTGAAGTCCATCTTGTTCCGCCACCAGTGACGTGTACTCACCATCATATG 2720
Query 2807 ACACCTGGCAGCAGCAGCAGTAGCAGTAGTGGTAGTAGCCTGATGAAAGGGTGTTGCTAT 2866
| |||||||||||| || ||||| ||| || || ||||| ||||||||||||||||||
Sbjct 2721 ATACCTGGCAGCAGTAGTAGTAG---TAGCGGCAGCAGCCTAATGAAAGGGTGTTGCTAT 2777
Query 2867 TCTTGTTTTGATTCATTTGTAGAAGATGTAGTTAAGATGATTCTAGACACAAGACAACCC 2926
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2778 TCTTGTTTTGATTCATTTGTAGAAGATGTAGTTAAAATGATTCTAGACACAAGACAACCC 2837
Query 2927 CATTGGTTGAGTCTAGGGCTCCACTAAACCCACTTGCTTCAATTGTCTA---GATTTGTT 2983
||||||||||| |||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct 2838 CATTGGTTGAGGCTAGGGCTCCACTAAAACCACTTGCTTCAATTGTTTATTAGATTCGTT 2897
Query 2984 AGAAAATTCAATTT 2997
|||||||| |||||
Sbjct 2898 AGAAAATTGAATTT 2911
Score = 246 bits (133), Expect = 6e-64
Identities = 157/168 (93%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1 AATTTTGGCTCATTACC--aaaaaaa-aaaaaaaTAGTTGTAAATAGAGAGAAAAATAAG 57
||||||||||||||||| ||||||| ||||||| || ||||||||||||| ||||||||
Sbjct 1 AATTTTGGCTCATTACCAAAAAAAAAGAAAAAAAAAGCTGTAAATAGAGAGGAAAATAAG 60
Query 58 GCGGGGAAAAGGATCACGATTCACAAAATTAGTGGAAAAATCATAAGTGTTTCGTCTTCT 117
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 61 GCGGGGAAAAGGATCACGATTCACAAATTTAGTGGAAAAATCAAAAGTGCTTCGTCTTCT 120
Query 118 TCATCGGAGATCTCGTGCTCTGAATTCGAGAATTGAGGTTTGAGATTT 165
||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 121 TCATCGGAGATCTGGTGCTCTGAATTGGAGAATTGAGGTTTGAGATTT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116708510680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5