BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05675.2
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477859 jgi|Araly1|477859|fgenesh2_kg.3__560__AT3G05675.1 2115 0.0
> Ahg477859 jgi|Araly1|477859|fgenesh2_kg.3__560__AT3G05675.1
Length=1628
Score = 2115 bits (1145), Expect = 0.0
Identities = 1297/1370 (95%), Gaps = 11/1370 (1%)
Strand=Plus/Plus
Query 413 GGTGCTGAAAGACA-AAAAACCTCAGCTTTTGCTCTATGGAGCCTCGAGATAATCAAGCC 471
||| |||||| ||| || || | |||||||| ||||||||||||||| ||||||||||||
Sbjct 111 GGTACTGAAATACATAACAATC-CAGCTTTTTCTCTATGGAGCCTCGTGATAATCAAGCC 169
Query 472 GAGGCTTCATATACATTTGGTGATCGATCAAGCAGTGACATAGTTGTTAGACTAAGAAAT 531
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 170 GAGGCTTCATATACATTTGGTGATCGATCGAGCAGTGACATAGTTGTTAGACTAAGAAAC 229
Query 532 GAAGAAGGTCGTGATGATTGGATCTATTGCCATTCCAAGATCCTTAGTGAGAAAAGCCAG 591
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GAAGAAGGCCGTGATGATTGGATCTATTGCCATTCCAAGATCCTTAGTGAGAAAAGCCAG 289
Query 592 TATTTTGCTGACCGTCTCTCTGATAAATGGCCCACTTGCAAGATTCTTGATTCACGTTAC 651
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 290 TACTTCGCTGACCGTCTCTCTGATAAATGGCCCACTTGCAAGATTCTTGATTCACGCTAC 349
Query 652 TGTGTTGAGGTCATCTGTCAAGAATCAGACTATGATCATCATATCAATCTCTTAAGACTT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGTGTTGAGGTCATCTGTCAAGAATCAGACTATGATCATCATATCAATCTCTTAAGACTT 409
Query 712 CTCTATGTTGTCTCTGATGATGTCCATGAGGATAACTTGTGTCATAATGTGAAAAGTGCG 771
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTCTATCTTGTCTCTGATGATGTCCATGAGGATAACTTGTGTCATAATGTGAAAAGTGCG 469
Query 772 TTGGGGATTCTCTCTGTCGCTAAAGAACTTAGTTGCCCTCAGATTGTCACTGCTTGTGTC 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TTGGGGATTCTCTCTGTCGCTAAAGAACTTAGTTGCCCTCAGATTGTCACTGCTTGTGTG 529
Query 832 AACTACTTGGAAGCTGTTCCATGGGAAGAAGGCGAAGAGGAAGAGATTCTGCGGATTGTA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 530 AACTACTTGGAAGCTGTTCCATGGGAAGAAGGCGAAGAGGAAGAGATTCTGCGGACTGTA 589
Query 892 CCGAGGATTGGATCAGAAGCAGAGCCGATTCTTGCCCGTCTCCAACCAGTTGATCAGTCC 951
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCGAGAATTGGATCAGAAGCAGAGCCGATTCTTGCCCGTCTCCAACCAGTTGATCAGTCC 649
Query 952 GCTGTT-CTTGAAATCTTTGTATCGGCTTTTAGGTTTGCTACTTCGTCCCCGCCTTTGCT 1010
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GCTGTTACT-GAAATCTTTGTATCGGCTTTTAGGTTTGCTACTTCGTCCCCGCCTTTGCC 708
Query 1011 CTTGGGTGACATAAAATCCTCTGCTCAAGAACAGATTGAGTATATGATAACTGAAGATGA 1070
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 709 CTTGGGTGACATAAAATCCTCGGCTCAAGAACAGATTGAGTATATGATAACCGAAGATGA 768
Query 1071 CGATGCACCGTTGTTGATTGCTGATGAAGAAGTCAAGCTTGAAGTAAAACAATGTGTAAA 1130
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 769 CGATGCACCGTTGTTGATTGCTGATGAAGAAGTCAAGCTTGAAGTAAAAGAATGTGTAAA 828
Query 1131 GAGCCTGTTTGTTAGATTCTTCCAGTGCCTAGAAGAAATCACTTTGAAACCCGTCGAGTC 1190
||||||||||| |||||||||||| || |||||||||| | |||| ||||||||||||||
Sbjct 829 GAGCCTGTTTGGTAGATTCTTCCAATGTCTAGAAGAAACCTCTTTCAAACCCGTCGAGTC 888
Query 1191 TGAGGTAATCAACAAAAAGGGGTCTTTTAGGATGGTCCTTTCAGATATGT-GTTGGGTTT 1249
|||||| || |||||||||||||||||||||||||| ||||||||| ||| || ||| ||
Sbjct 889 TGAGGTTATTAACAAAAAGGGGTCTTTTAGGATGGTTCTTTCAGATTTGTCGT-GGGCTT 947
Query 1250 TTCAGATATTAACGAAGATGGAAGTTGTTAGAGATTTTGTTATAACATGGGCTGACATAT 1309
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 948 TTCAGATATTAACAAAGATGGAAGTGGTTAGAGATTTTGTTATAACATGGGTTGACATAT 1007
Query 1310 CTGAGAAGTTAGTTAAGGTAGTTGAGCAGTTGGAAACAACAGTTGTAGAGGCTGTTGAGA 1369
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1008 CTGAGAAGTTAGTTAAGGTAGTTGAGCAGTTGGAAACAACAGTTGCAGAGACTGTTGAGA 1067
Query 1370 TAAGAGTCAAGGTCATCGAGGTGACTGCAAAAGTCATAGAAGCGATTGGTTATGGAACAG 1429
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1068 TAAGAGTCAAGGTCATTGAGGTGACTGCAAAAGTCATAGAGGCGATCGGTTATGGAACAG 1127
Query 1430 TGATATTACCAACAGCGAAACGGCTTCAGATGGTAAAACTATGGCTTCCTTTTGTAAGAA 1489
||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1128 TGATATTGCCAACAGCGAAAAGGCTTGAGATGGTAAAACTATGGCTTCCTTTTGTAAGAA 1187
Query 1490 ACACAAAGCCTCTTGTTGACTCACCGGTTAGAGAAGATGAGGAGAATGATACTGTGAGAT 1549
|||||||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1188 ACACAAAGCCACTTGTTGACTCACCGGTTACTGAAGATGAGGGGAATGGTACTGTGAGAT 1247
Query 1550 ATAAAATCGACGGAGAGATATGGCAAGCTTTAGAATCTTCCTTTGTATCGATAATTCTGG 1609
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATAAAATTGATGGAGAGATATGGCAAGCTTTAGAATCTTCCTTTGTATCGATAATTCTGG 1307
Query 1610 CATTGCCATCTGCAGACCAAGCTGAGATATTGACTGAATGGTTAAGCAAGAATGGGTTGT 1669
|||||||||| |||||||||||||||||||| || ||||||||| ||||||| |||||||
Sbjct 1308 CATTGCCATCCGCAGACCAAGCTGAGATATTAACGGAATGGTTAGGCAAGAACGGGTTGT 1367
Query 1670 ATCCGGATTTAACAGAAGCTTTCGAGGTTTGGTGTTACAGATCGAAAGTCGCGAAGAGAA 1729
|||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1368 ATCCGGATTTGACAGAAGCTTTTGAGGTTTGGTGTTACAGATCAAAAGTCGCAAAGAGAA 1427
Query 1730 GATTGGGTTTAG-TCGG-GG-GTG-AAGAGGAGAACGGCATGTCTTAACT 1775
|||||||||| | | || || | | |||| |||||||| |||||||||||
Sbjct 1428 GATTGGGTTT-GCTTGGCGGCGAGGAAGATGAGAACGGTATGTCTTAACT 1476
Score = 122 bits (66), Expect = 7e-27
Identities = 75/79 (95%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 3 agaagagagagag--agCGAAGGAGATCGGGTGGAGTTTGGATGATATCAGAGTTGTCCG 60
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAGAGAGAGAAAGCGAAAGAGATCGGGTGGAGTTTGGATGATATCAGAGTTGTCCG 60
Query 61 TAGATGCAATAGGATTAAA 79
||||||||||| |||||||
Sbjct 61 TAGATGCAATAAGATTAAA 79
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 112 ACCACTGAGAATCTTAAAGATTCAACATTTAGGGTACT 149
|||| |||||||||||||||||||||||||||||||||
Sbjct 79 ACCATTGAGAATCTTAAAGATTCAACATTTAGGGTACT 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5