BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05685.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928170 jgi|Araly1|928170|scaffold_300627.1 394 4e-109
Ahg340742 jgi|Araly1|340742|fgenesh1_pg.C_scaffold_3000505 217 8e-56
> Ahg928170 jgi|Araly1|928170|scaffold_300627.1
Length=712
Score = 394 bits (213), Expect = 4e-109
Identities = 260/283 (92%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 51 CGAAGAGTACGTTGACCCTAACGAGGAGCTAAAACATCCGACGTGGTTTAAAGTCCCTGA 110
||| || |||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 155 CGATGATTACGTTGACCCTGACGATGAGCTCTTACATCCGACGTGGTTTAAAGTCCCTGA 214
Query 111 ATGGGATGTGGACAGCTTCGAAGGTCTCGAGTACAATTCCTCTGAATATAAAAATGAATT 170
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 215 ATGGGATGTGGACAGCTTCGGTGGTCTCGAGTACGATTCCTCTGAATATAAAAATGAATT 274
Query 171 CTCTAATGACGAAGATGAAAATCAATGGCGCCGCTTTAAGCGCCAGCTCATCGAGAATAA 230
| | || || ||| ||||||| | |||||| |||||||||||||||||||||||||| ||
Sbjct 275 CCCCAAGGAAGAACATGAAAAACTATGGCGTCGCTTTAAGCGCCAGCTCATCGAGAACAA 334
Query 231 GGGGTTTTATGTGGAGCGAGAGCTTTGGCC-ATGGTACAACTACTCGGATTACAAAGTAG 289
||||||||||||||||| |||||||||||| || |||||||||||| |||||||||||||
Sbjct 335 GGGGTTTTATGTGGAGCCAGAGCTTTGGCCAAT-GTACAACTACTCAGATTACAAAGTAG 393
Query 290 TCCCTAATTTGGATTTGCCTGCCAGTTTCGGGCAAACCTACCG 332
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCCCTAATTTGGATTTGCCTGCCAGTTTCGGGCAAACCTACCG 436
Score = 206 bits (111), Expect = 2e-52
Identities = 157/179 (88%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 338 TCG-ATGTGGAGTTTGTGGAAGTGGTGCGAGGTATATTTTCAGCAGGATC-AAGGTCAAA 395
||| |||| |||||||||||||||||| ||||||||||| |||| ||||| || |||||
Sbjct 495 TCGAATGTAGAGTTTGTGGAAGTGGTGAGAGGTATATTTACAGCCGGATCTAAA-TCAAA 553
Query 396 GTCGTTCATCACATTCATGGCTAGGGAGAAACCTGATGGACCTCCTGTTGAGTATCAAGC 455
||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 554 GTCGTACATTACATTTATGGCTAGGGAGAAACCTGATGGACCTCTTGTCGAGTATCAAGC 613
Query 456 TAAGGTTTGGTGTACGGTTGTTCGAAACCAGAACTATCCCATCCTCTGTAGACGGGCTC 514
||| || |||||||| || || || || ||||||||||||| ||||||||||||||||
Sbjct 614 TAAAGTGTGGTGTACTGTAATTAGACACGAGAACTATCCCATTCTCTGTAGACGGGCTC 672
> Ahg340742 jgi|Araly1|340742|fgenesh1_pg.C_scaffold_3000505
Length=831
Score = 217 bits (117), Expect = 8e-56
Identities = 183/214 (86%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 334 GGTTTCGATGTGGAGTTTGTGGAAGTGGTGCGAGGTATATTTTCAGCAGGATC-AAGGTC 392
|||||| ||||||||||||||||||||||||||||| |||| | |||||| | || ||
Sbjct 622 GGTTTCAATGTGGAGTTTGTGGAAGTGGTGCGAGGTGCATTTACTGCAGGACCTAAA-TC 680
Query 393 AAAGTCGTTCATCACATTCATGGCTAGGGAGAAACCTGATGGACCTCCTGTTGAGTATCA 452
|||||||| ||| ||||| ||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 681 AAAGTCGTACATTACATTTATGGCTAGGGAGAAACCTGATGGGCCTCTTGTCGAGTATCA 740
Query 453 A-GCTAAGGTTTGGTGTACGGTTGTTCGAAACCAGAACTATCCCATCCTCTGTAGACGGG 511
| || |||| ||||| |||| |||||||| || |||||||||||||||||||||||| |
Sbjct 741 ATGC-AAGGCTTGGTCTACGTTTGTTCGACACGAGAACTATCCCATCCTCTGTAGACCTG 799
Query 512 CTC-TCACAACAAAGC-CTCCAAGCCAAAACTAG 543
||| | || |||||| ||| || ||||||||||
Sbjct 800 CTCCT-ACCCCAAAGCTCTCAAA-CCAAAACTAG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5