BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05690.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477862 jgi|Araly1|477862|fgenesh2_kg.3__563__AT3G05690.1 2289 0.0
Ahg940092 jgi|Araly1|940092|scaffold_600636.1 348 8e-95
> Ahg477862 jgi|Araly1|477862|fgenesh2_kg.3__563__AT3G05690.1
Length=1462
Score = 2289 bits (1239), Expect = 0.0
Identities = 1398/1472 (95%), Gaps = 22/1472 (1%)
Strand=Plus/Plus
Query 4 TACTAATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGAGATGGCTTCCTAACA 63
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2 TACTCATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGATATGGCTTCCTAACA 61
Query 64 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCTCTTCTCTACTCTCTACTC--T 121
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 62 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCGCTTCTCTACTCTCTACTCTAT 121
Query 122 -ATCACTCCATCTGT---GAACATATCTTTCTTATTCTTCTAGGCACTATCTATTTTTCA 177
|||||||||||||| ||||| ||||||||| ||| || | ||| |||| | ||||||
Sbjct 122 CATCACTCCATCTGTGAGGAACAAATCTTTCTTCTTC-TC-A-GCAATATCCACTTTTCA 178
Query 178 CTTTTTGTAATTGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 237
| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 C-TTTTGT-ATCGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 236
Query 238 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCC 296
Query 298 CCGGCGATTCTGACTCATTCGCCGGAGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAC 357
|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 297 CCGGCGATTCTGACTCGTTCGCCAGTGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAG 356
Query 358 GTGTGGATAAACAGAGCAACTCTGCAACGCACTTAGCTTTCTCACTTGGTGATGTAAAGA 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 GTGTGGATAAACAGAGCAACTCTGCAACTCACTTAGCTTTCTCACTTGGTGATGTAAAGA 416
Query 418 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTGG 477
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 417 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCATTGCAATCGCCTTGCTTGG 476
Query 478 AACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCTATGGAGAACAACAATACT 537
||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||| || |
Sbjct 477 AACTTGGATTTACTCAGCCACCGATCTACACAAAGTATCCTTATGGGGAACCACAGTATT 536
Query 538 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAAACATGGAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 537 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAACCATGGAAA 596
Query 598 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGAGACGCC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGCGACGCC 656
Query 658 AATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGTAGATGCCGCA 717
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 AGTCCCGTGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGCAGATGCCGCA 716
Query 718 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 776
Query 778 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAATAGCGGAACCAATGCAAAGAAAG 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAAAAGCGGAACCAATGCAAAGAAAG 836
Query 838 GTGATGGAAGTATGCAGATTCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 897
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGACGGAAGTATGCAGATCCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 896
Query 898 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAACGGATTAAATGTGTCGG 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAATGGATTAAATGTGTCGG 956
Query 958 GATCAGAAGTTACTAGCATGAACTACTTCCTAAGTTCTCCCGTTCATTCTCTTGGTGGCA 1017
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 957 GATCAGAAGTTACAAGCATGAACTACTTCCTAAGTTCTCCAGTCCATTCTCTTGGTGGCA 1016
Query 1018 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGCAATGGATAATGGCTGCTGCAATT 1077
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1017 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGGAATGGATAATGGCTGCCGCAATT 1076
Query 1078 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1136
Query 1138 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTGGCTGTGAACAGGCAAATCATCTT 1197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTAGCTGTGAACAGGCAAATCATCTT 1196
Query 1198 TGGCTCATTCTCTATTAAGGTAACTTCGCCGTGAGGTGAAAAAAGCTTTGATATATTTAT 1257
||||||||||||||||||||| ||||| | || ||||||||||| ||||||| || ||
Sbjct 1197 TGGCTCATTCTCTATTAAGGTCACTTCACTGTCAGGTGAAAAAA-CTTTGAT-TA---AT 1251
Query 1258 CTTCAGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGTGTTTGGTCACTAAACCC 1317
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1252 CTTCTGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGGGTTTGGTCACTAAACCC 1311
Query 1318 ACTTGTTCCAACTAGTAGTGTGTGT-T-T-T-AAGAAAACTCTGTTATCTGATTTT-GTA 1372
||||| ||||||||||||||||||| | | | |||||||||||||||||||||||| |||
Sbjct 1312 ACTTGCTCCAACTAGTAGTGTGTGTGTGTGTTAAGAAAACTCTGTTATCTGATTTTTGTA 1371
Query 1373 GCTCTCTCTGGCTTTGTGTGTTTCTCAAACAACTGTAACAACTTTTAAGTTATGTGGTTT 1432
|||||||||| || |||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 1372 GCTCTCTCTGTCTCTGTGTGTTTCTCAAACAACTGTAAGAA-TTTTAAGTTATGTGGCTT 1430
Query 1433 ATGTAACATATTTAAGACCTGTGTTTTTGTAT 1464
|||||||||||||||||| |||||||||||||
Sbjct 1431 ATGTAACATATTTAAGACGTGTGTTTTTGTAT 1462
> Ahg940092 jgi|Araly1|940092|scaffold_600636.1
Length=852
Score = 348 bits (188), Expect = 8e-95
Identities = 495/631 (78%), Gaps = 69/631 (11%)
Strand=Plus/Plus
Query 188 TTGGA-ATTTGGAGAT-GGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG-CTCCACA 244
||||| |||||| || ||||||||||| |||| ||| || || || | | |||||
Sbjct 1 TTGGACTTTTGGACATAAGCTATGCAAAC--TGAG-GAA---CTTTTGTC-GCCACCACA 53
Query 245 GACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCGCCGGCGA 304
|||| ||||||||| ||||||||||||||||| |||| || | ||||| || |||||||
Sbjct 54 GACTCCTTGGTGGAATGCTTTTGGATCTCAGCAGTTGACTACAGAGAGCCTTTCCGGCGA 113
Query 305 ---TTCTGACTCATTCGCCGGAGTTAAGGTCGGATCT-GTCGGAGAGACAGGACAA--CG 358
|||||| |||||| |||||||||||| | | | | || ||||||| |||| |
Sbjct 114 CGCTTCTGATTCATTCACCGGAGTTAAGG-CAG-T-TACTC-CTGAGACAGAACAAGGTG 169
Query 359 T-GTGGATAAACAGAGCAACTCTGCAACGCACTTAG-CTTTCTCACTTGGTGATGTAAAG 416
| ||||||||||| | | ||| |||| | ||| | ||||||||| ||||| || ||||
Sbjct 170 TGGTGGATAAACA-A--AGTTCTACAACTCTCTT-GACTTTCTCACCTGGTGGTGGAAAG 225
Query 417 AGTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTG 476
||| ||||| |||||||||||||||| | | ||||| | ||||||||| |||||||
Sbjct 226 AGTTCAAGAGATGTGCCAAAGCCTCAT---GTTGCTTTCACGATGCAATCAGCTTGCTTC 282
Query 477 GAACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCT-ATGGAGAACAACAATA 535
|| |||||||| |||||||| |||||| |||||| || ||| ||| || |||||||
Sbjct 283 GAGTTTGGATTTGCTCAGCCAATGATCTACACAAAGCAT-CCTCATGTAG---AACAATA 338
Query 536 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAG--CA--GGG----T-AATGCTTCCTCT 586
||||||||||||||||||||||||||||||||| | ||| | |||||| |||||
Sbjct 339 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAGGTCTTCGGGACGATTAATGCTGCCTCT 398
Query 587 AAACATGGAAAC-G--GAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAAT 643
||| ||||| || | |||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 399 AAAGATGGAGACAGAAGAAGATGGTACCATCTATGTGAACTCGAAGCAGTACCATGGAAT 458
Query 644 CATAAGGAGACGCCAATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAG 703
|| ||| ||||||| ||||| |||||||||| | | || | | |||
Sbjct 459 TATCAGGCGACGCCAGTCCCGAGCAAAGGCTG------------A--A-AA-AC-T-GAG 500
Query 704 TAGTAGATGCCGCAAGCCATATATGCATCATTCGCGCCATCTCCATGC-ATTGCGGCGTC 762
||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||| ||||
Sbjct 501 TAG-A--TGCCGTAAGCCATATATGCATCACTCGCGCCATCTCCATGCTAT-GCGCCGTC 556
Query 763 CTAGAGGATCCGGTGGGAGATTCTTGAACAC 793
|||||||||| |||||| | |||||||||||
Sbjct 557 CTAGAGGATCTGGTGGGCGTTTCTTGAACAC 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5