BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05700.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477863 jgi|Araly1|477863|fgenesh2_kg.3__564__AT3G05700.1 1338 0.0
Ahg952566 jgi|Araly1|952566|scaffold_8800007.1 887 0.0
> Ahg477863 jgi|Araly1|477863|fgenesh2_kg.3__564__AT3G05700.1
Length=1202
Score = 1338 bits (724), Expect = 0.0
Identities = 943/1043 (90%), Gaps = 38/1043 (4%)
Strand=Plus/Plus
Query 238 GTTTTGTCAATAATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGA 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 176 GTTTTGTCAATAATGGATTCTGATTCATGGAGTGATCGTCTTGCTTCAGCTACAAGGAGA 235
Query 298 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGA 357
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TACCAGCTAGCTTTTCCACCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGG 295
Query 358 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATAGTGTG 355
Query 418 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCG 415
Query 478 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAAT 537
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 416 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAACATGCTAAT 475
Query 538 ATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCG 597
|| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 476 ATATTCAAGATGCACCGCAAGAGAAAATCAAGAAGAGGCGGGTCACATTCCACGTTATCG 535
Query 598 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGT 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 536 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTATTTGGAGGATCTTCGTGT 595
Query 658 ATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATT 717
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 ATAGTATCTTCTTCCTCATCATCCAATGTAGCGGCTGACCCATTGTTATCGTCGTTCATT 655
Query 718 TCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCT 777
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 656 TCACCTATTGCTGAAGGGTTCTTCACAACGGAGTCATGTATATCTGCAGAAACCGGTTCT 715
Query 778 GTCAAGAAAACAACTAT-TCAGTGTTTACCCGAACAGAATGCGaaaaaaaCT-TCTCTTT 835
||||||||| || || |||| || |||| ||| |||||| ||||| || |||||||
Sbjct 716 GTCAAGAAACCAT-TAACTCAGAGTATACCTGAAGGGAATGC-AAAAATACCGTCTCTTT 773
Query 836 CAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCT 895
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 774 CAGCTGAGGATCATAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTGTTGAGCT 833
Query 896 CTACGATTCTTGATGACAGCTTATAATGGAGTA---TCGCTTCTGGTAACTTGTCAGCAA 952
||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||
Sbjct 834 CTACGATTCTTGATGACGGCTTATGATGGAGTAGAAT-GCTTCTGGTAACTTGTCAGCAA 892
Query 953 TGAGGAAACTCCATGTTCTGTCTCAGCAGGACAAAGTACGAAATTATTGTTTGTGGGGAG 1012
|||||||||||||||||||||||||| || | || ||| |||||||||||||||||||||
Sbjct 893 TGAGGAAACTCCATGTTCTGTCTCAGGAG-A-AA-GTAGGAAATTATTGTTTGTGGGGAG 949
Query 1013 CAAATAAAGGAGAGAGA--------TTATGAATGAGTGTAACCTAAGAACACATTA---G 1061
||||||||||||||||| ||||||||||||||||| || |||||||||| |
Sbjct 950 CAAATAAAGGAGAGAGAGAAAGAGATTATGAATGAGTGTAACTTATGAACACATTAATAG 1009
Query 1062 CTTCTGCGGTTAACGCCCCAATTGCTTGTAGGTCATGAGaaaaaaaacaaaaaTGTATGT 1121
|||||||||||||||| |||||||| |||||||||||| ||||| ||||| ||||| |
Sbjct 1010 CTTCTGCGGTTAACGCTCCAATTGCCTGTAGGTCATGA-AAAAA---CAAAA-TGTATCT 1064
Query 1122 ATTTCACGTATTCGCGTTCAATTATTCGTTTCCAGTTGTTT-ACTAGGATAAGA-ATGAC 1179
|||||||||||| || ||||||||||||||||||||| || | || || || | ||
Sbjct 1065 ATTTCACGTATTTGCATTCAATTATTCGTTTCCAGTTCCTTGA-TACAATCTGACA-GAG 1122
Query 1180 CATATAT-G-TTGAAAATTTGTCATGGAAACGGCTTCAGATTTTGTAGAGGCACATT-CT 1236
| |||| | || | || ||||||| |||| ||||||||||||||||||||||| ||
Sbjct 1123 AA-ATATCGGTTCCTACTT-GTCATGGCAACGATTTCAGATTTTGTAGAGGCACATTTCT 1180
Query 1237 TCT-GCAATCAGATTTATAGCTT 1258
||| | |||||||||| ||||||
Sbjct 1181 TCTTG-AATCAGATTTTTAGCTT 1202
Score = 209 bits (113), Expect = 3e-53
Identities = 143/156 (92%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 46 aaaaaaaGAAAGACAAAACTTTG-TTAATAAACCGACCCAGAATCGTGGTCTTCATAATC 104
||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 24 AAAAAAAGAAAGACAAAACTTTGTTTAA-AAACCGACCCAGAATCGTGGTCTTTGTAATC 82
Query 105 TGTC-TTTACCATTTTCGTTGGATTTCTTCAGACAGTAATCAGAATCATTTACTTTCGTA 163
|||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 83 TGTCTTTTACCATTTTCGTTGGATTTCTTCAGACAATAATCAGAATCATTTTCTTTCGTA 142
Query 164 TA-CAGATTCATTTTCTTCAAAACGTTTTATTTGTT 198
| | ||||||||||||||| ||| ||| |||||||
Sbjct 143 AATC-GATTCATTTTCTTCATAAC-TTT-ATTTGTT 175
> Ahg952566 jgi|Araly1|952566|scaffold_8800007.1
Length=686
Score = 887 bits (480), Expect = 0.0
Identities = 638/708 (90%), Gaps = 35/708 (5%)
Strand=Plus/Plus
Query 238 GTTTTGTCAATAATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGA 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 9 GTTTTGTCAATAATGGATTCTGATTCATGGAGTGATCGTCTTGCTTCAGCTACAAGGAGA 68
Query 298 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGG 128
Query 358 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 129 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATAGTGTG 188
Query 418 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCA 477
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 189 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAGACCGGGGTATGTCCA 248
Query 478 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAAT 537
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 249 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAACA---TAG- 304
Query 538 ATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCG 597
| || || || | || | || | | ||||||| ||||||| ||||||
Sbjct 305 A-----AA-AT-CA----A-GA-A-------GA-G-G-CGGGTCACATTCCACGTTATCG 341
Query 598 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGT 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 342 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTATTTGGAGGATCTTCGTGT 401
Query 658 ATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATT 717
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 402 ATAGTATCTTCTTCCTCATCATCCAATGTAGCGGCTGACCCATTGTTATCGTCGTTCATT 461
Query 718 TCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCT 777
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 462 TCACCTATTGCTGAAGGGTTCTTCACAACGGAGTCATGTATATCTGCAGAAACCGGTTCT 521
Query 778 GTCAAGAAAACAACTAT-TCAGTGTTTACCCGAACAGAATGCGaaaaaaaCT-TCTCTTT 835
||||||||| || || |||| || |||| ||| |||||| ||||| || |||||||
Sbjct 522 GTCAAGAAACCAT-TAACTCAGAGTATACCTGAAGGGAATGC-AAAAATACCGTCTCTTT 579
Query 836 CAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCT 895
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 580 CAGCTGAGGATCATAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTGTTGAGCT 639
Query 896 CTACGATTCTTGATGACAGCTTATAATGGAGTA---TCGCTTCTGGTA 940
||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 640 CTACGATTCTTGATGACGGCTTATAATGGAGTAAAAT-GCTTCTGGTA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5