BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05710.2
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2 2272 0.0
Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2 2015 0.0
Ahg942284 jgi|Araly1|942284|scaffold_602828.1 878 0.0
> Ahg477864 jgi|Araly1|477864|fgenesh2_kg.3__565__AT3G05710.2
Length=1521
Score = 2272 bits (1230), Expect = 0.0
Identities = 1463/1566 (93%), Gaps = 53/1566 (3%)
Strand=Plus/Plus
Query 24 TTGTGAATCTGGGCGCTGTTTTTCTCCGTCGGAGAA-TTTGATCCCGCCGG-AGATCGGC 81
|||||||||| || |||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 1 TTGTGAATCTCGGAGCTGTTTTTCTCCGTCGGAGAACTTTGATCCCGCCGGTA-ATCGGC 59
Query 82 CGGTTTCCGCAGTCGCATTCGTTTCTTTCGCGCGATTTTCGATGCTTTGTCTATGATGAA 141
|||||||||| || || | || || || ||||||||||||||||||
Sbjct 60 CGGTTTCCGC---CG---TC---ACATT----CG---TT---TGCTTTGTCTATGATGAA 100
Query 142 ACCGCGATCCTGTTTAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCCATCTAGA 201
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 101 ACCGCGATCCTGTTCAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCTATCTAGA 160
Query 202 CGCCGAGATCTTGGTTAGC-TATCACTGAGATTCTTATAGGGTTTATATTTGAGCTGTTA 260
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||
Sbjct 161 CGCCGAGATCTTGGTTA-CTTATCACTGAGATTCTTCTAGGGTTTATATTTGAGCTGCTA 219
Query 261 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTTC 320
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 220 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAGCTCTCTAAGGAGCGTTC 279
Query 321 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGGAG 380
||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 280 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACGGTAACGGAGCACACTTCGTTGACCGGAG 339
Query 381 CTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCAAATC 440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 340 CTAAATCCGGCTTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCGAATC 399
Query 441 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAATTCGAGTAGAGGTACAATAACAG 500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 400 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGTAATTCGAGTAGAGGTACAATAACAG 459
Query 501 TGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 560
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGGGATTACCACCAGACTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 519
Query 561 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 579
Query 621 GGGATGGTAAAGAAGATCAACATCAAATCGAGACTTTGACACAAGAGGTTACCTTCCTAT 680
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 580 GGGATGGTAAAGAAGATCAACATCAAATCGAGTCTTTGACACAAGAGATCACCTTCCTAT 639
Query 681 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 699
Query 741 ATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTATGGAGT 800
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 700 ATGTCAGAAAAAACGTCCAGCGATCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGC 759
Query 801 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGAGCGG 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGATCGG 819
Query 861 ATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTTGATGATA 920
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 820 ATATAGAGATGAATCTGAACGGAAGCAGCTATAATGCAGAAGATGATGACTTTGATGATA 879
Query 921 TGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCAATAGAGA 980
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 880 TGGTATTTAGTGAGCATCAAATAAGCAAGATAAAAAAGAGTGAGGAAATATCAGTAGAGA 939
Query 981 GGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 1040
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 940 GGGAGAAAGAGATTCAACAGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 999
Query 1041 ATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTATAATATCC 1100
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1000 ATCTTTCCGCGCTTGTGATAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCC 1059
Query 1101 AGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1160
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGAACGTTGCTAGTACCGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1119
Query 1161 AGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTCATCATGC 1220
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1120 AGAGACAAGGAGGTATGGTGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGC 1179
Query 1221 TGGTACTCTTAATCCTCAAGGAGATTCTGTTGTGACACAAGGAGATCCCTCATT-TTTTA 1279
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1180 TGGTACTCTTAATCCTCAAGGAGATTCTCTTGTGACACAAGGAGATCCCTCATTATTTTT 1239
Query 1280 ATTCTTTTGAAACGCGAACACCACAATTTTTGCGTTGCGGAGTGTTCTGT--CCACAAAA 1337
||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 1240 ATTCTTTTGAAACAAGAACACCACA-TTTTTGCGTTGCGGAGTGTTCTCTATCCACAAAA 1298
Query 1338 TG-TCCTGAAGAGAAAAACGAACTGTGTTGTCTATCTCGCTCAGTGGCTTTTACTGCAGC 1396
|| ||| |||||||||||||||||||||||||||||| |||| | || | ||
Sbjct 1299 TGGTCC-GAAGAGAAAAACGAACTGTGTTGTCTATCTGGCTC-G---CT------G--GC 1345
Query 1397 CTCTTCTGCTTTCTTTTTTATTTCTTATGGCGTTTACATAGGAAAACATTATCACTTTTG 1456
| || | ||| ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1346 -T-TT-T--TTT-TTTTTTACTTCTTATGGCGTTTACATAGGAGAACATTATCACTTTTG 1399
Query 1457 TATTGAGTGTTTGTAAGTTGGCTTCTTACGAGTTTATAATGGATTTATTTAC-TGTAAAG 1515
|||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1400 TATTGAATGTTTGTAACTTGGCTTCTTACGAGTTTATAATG-ATTTATTTACATGTAAAG 1458
Query 1516 AATATATTAACCATGATTTTAAGAATCTGTGGAGAAGAGATCATATAGAACTGTAACGTT 1575
|| || | |||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct 1459 AA-AT-T-AACCATGATTTTAAGAATCTATGGAGAAGAGATCAGATAGAACTGTAAAGTT 1515
Query 1576 TGTTCC 1581
||||||
Sbjct 1516 TGTTCC 1521
> Ahg497246 jgi|Araly1|497246|fgenesh2_kg.88__2__AT3G05710.2
Length=1283
Score = 2015 bits (1091), Expect = 0.0
Identities = 1238/1305 (95%), Gaps = 26/1305 (2%)
Strand=Plus/Plus
Query 24 TTGTGAATCTGGGCGCTGTTTTTCTCCGTCGGAGAA-TTTGATCCCGCCGG-AGATCGGC 81
|||||||||| || |||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 1 TTGTGAATCTCGGAGCTGTTTTTCTCCGTCGGAGAACTTTGATCCCGCCGGTA-ATCGGC 59
Query 82 CGGTTTCCGCAGTCGCATTCGTTTCTTTCGCGCGATTTTCGATGCTTTGTCTATGATGAA 141
|||||||||| || || | || || || ||||||||||||||||||
Sbjct 60 CGGTTTCCGC---CG---TC---ACATT----CG---TT---TGCTTTGTCTATGATGAA 100
Query 142 ACCGCGATCCTGTTTAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCCATCTAGA 201
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 101 ACCGCGATCCTGTTCAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCTATCTAGA 160
Query 202 CGCCGAGATCTTGGTTAGC-TATCACTGAGATTCTTATAGGGTTTATATTTGAGCTGTTA 260
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||
Sbjct 161 CGCCGAGATCTTGGTTA-CTTATCACTGAGATTCTTCTAGGGTTTATATTTGAGCTGCTA 219
Query 261 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTTC 320
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 220 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAGCTCTCTAAGGAGCGTTC 279
Query 321 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGGAG 380
||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 280 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACGGTAACGGAGCACACTTCGTTGACCGGAG 339
Query 381 CTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCAAATC 440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 340 CTAAATCCGGCTTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCGAATC 399
Query 441 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAATTCGAGTAGAGGTACAATAACAG 500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 400 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGTAATTCGAGTAGAGGTACAATAACAG 459
Query 501 TGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 560
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGGGATTACCACCAGATTGGCTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 519
Query 561 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 579
Query 621 GGGATGGTAAAGAAGATCAACATCAAATCGAGACTTTGACACAAGAGGTTACCTTCCTAT 680
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 580 GGGATGGTAAAGAAGATCAACATCAAATCGAGTCTTTGACACAAGAGATCACCTTCCTAT 639
Query 681 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 699
Query 741 ATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTATGGAGT 800
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 700 ATGTCAGAAAAAACGTCCAGCGATCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGC 759
Query 801 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGAGCGG 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGATCGG 819
Query 861 ATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTTGATGATA 920
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 820 ATATAGAGATGAATCTGAACGGAAGCAGCTATAATGCAGAAGATGATGACTTTGATGATA 879
Query 921 TGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCAATAGAGA 980
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 880 TGGTATTTAGTGAGCATCAAATAAGCAAGATAAAAAAGAGTGAGGAAATATCAGTAGAGA 939
Query 981 GGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 1040
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 940 GGGAGAAAGAGATTCAACAGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 999
Query 1041 ATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTATAATATCC 1100
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1000 ATCTTTCCGCGCTTGTGATAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCC 1059
Query 1101 AGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1160
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGAACGTTGCTAGTACCGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1119
Query 1161 AGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTCATCATGC 1220
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1120 AGAGACAAGGAGGTATGGTGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGC 1179
Query 1221 TGGTACTCTTAATCCTCAAGGAGATTCTGTTGTGACACAAGGAGATCCCTCATT-TTTTA 1279
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1180 TGGTACTCTTAATCCTCAAGGAGATTCTCTTGTGACACAAGGAGATCCCTCATTATTTTT 1239
Query 1280 ATTCTTTTGAAACGCGAACACCACAATTTTTGCGTTGCGGAGTGT 1324
||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1240 ATTCTTTTGAAACAAGAACACCACA-TTTTTGCGTTGCGGAGTGT 1283
> Ahg942284 jgi|Araly1|942284|scaffold_602828.1
Length=1009
Score = 878 bits (475), Expect = 0.0
Identities = 834/1003 (83%), Gaps = 41/1003 (4%)
Strand=Plus/Plus
Query 260 ATGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTT 319
|||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 21 ATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGGAGCG-T 79
Query 320 C-GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGG 378
| | ||||| || |||||| || | | ||||||||| | || | || | || |
Sbjct 80 CAGAGCTCC-AT--TGTCGTCATC-T--T---CATTGACGG-GAAC-A--CGAT--CC-G 123
Query 379 AGCTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGC-ACGTC-TCTATTGAATCCA 436
|| | | || || ||||| ||||| ||||||| | || || | ||||||||||
Sbjct 124 -GC----GGC-G-TT-GGTCCGGTTATCGAAATGGCGA-CTACTTCGT-TATTGAATCCG 173
Query 437 AATCGGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAA-TTCGAGTAGAGGTACAAT 495
||||| |||||| |||| || |||||||| |||||| |||| ||| |||| |||| | ||
Sbjct 174 AATCGCTCTTATACTCCTGTTAGTACCGAAGATCCT-GGAACTTCTAGTAAAGGTGCGAT 232
Query 496 AACAGTGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCA 555
||||||||| |||||||||| |||||||||||||||||||||||| || || |||| ||
Sbjct 233 AACAGTGGGATTACCACCAGCTTGGGTTGATGTATCTGAGGAGATATCGGTGAACATACA 292
Query 556 ACGTGCAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTC 615
|| ||||| || |||||||| || ||||||||||||||||| || ||||| ||||| ||
Sbjct 293 GCGAGCAAGGACTAAAATGGCGGAGTTGGGAAAGGCTCATGCTAAGGCGTTAATGCCATC 352
Query 616 GTTTGGGGATGGTAAAGAAGATCAACATCAA-ATCGAGACTTTGACACAAGAGGTTACCT 674
|||||| ||||||||||||||||||||| || || ||| ||||||| || ||| | || |
Sbjct 353 GTTTGGTGATGGTAAAGAAGATCAACAT-AATATTGAGTCTTTGACGCAGGAGATAACTT 411
Query 675 TCCTATTGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAG 734
| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 412 TTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCGGCTGGGCCTTCTGAAG 471
Query 735 ATTCAAATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTA 794
|||| ||||| ||||| || || ||||| |||||||| || || |||||| |||||||
Sbjct 472 ATTCGAATGTTAGGAAGAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTA 531
Query 795 TGGAGTTACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTA-CAAAAAGAGGAT 853
||||| | ||||| |||||||| |||||||||||||| ||||||| | ||||||||||||
Sbjct 532 TGGAGCTCCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGAC-AGCAAAAAGAGGAT 590
Query 854 GGAGCGGATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTT 913
|| | |||||||||||||||||||| | ||| |||||||| | | ||||| |||||||||
Sbjct 591 GGGGTGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTT 650
Query 914 GATGATATGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCA 973
|| |||||| || | |||||||| ||| ||||||||||||||| |||||| ||||
Sbjct 651 GACGATATGTTAA--AC-GAGCATCAGATGTCCAAGATAAAAAAGAGCGAGGAAGTATCG 707
Query 974 ATAGAGAGGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATC 1033
||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||| |||
Sbjct 708 GTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATC 767
Query 1034 ATGAAGGATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTAT 1093
||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 768 ATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTAT 827
Query 1094 AATATCCAGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAA 1153
|||||| | ||||| |||| ||| || || ||||| |||||||| ||||| ||||| ||
Sbjct 828 AATATCGAAAACGTCGCTACTACCGTTGAAGATGGCCTCAAACAACTGCAGAAGGCAGAG 887
Query 1154 CGTACACAGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTC 1213
|| || |||||||| ||||| ||||||| ||| || ||||| |||||||| ||||| |||
Sbjct 888 CGAACGCAGAGACATGGAGGGATGGTGAAGTGCGCATCTGTCCTTGTCATCCTCTGTTTC 947
Query 1214 ATCATGCTGGTACTCTTAATCCTCAAGGAGAT-TCTGTTGTGA 1255
||||||||| ||||||||||||| ||||| || | | ||||||
Sbjct 948 ATCATGCTGCTACTCTTAATCCTTAAGGAAATAT-TCTTGTGA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5