BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05750.1 Length=2900 Score E Sequences producing significant alignments: (Bits) Value Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1 3877 0.0 Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1 292 7e-78 > Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1 Length=2842 Score = 3877 bits (2099), Expect = 0.0 Identities = 2501/2687 (93%), Gaps = 60/2687 (2%) Strand=Plus/Plus Query 235 AGAGAGACGAAAGTGAAAGACTTTCGTTGTTTTTAGGGTTTCAATCTTCAGTATCTCAGA 294 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 192 AGAGAGACGAAAATGAAAGACTTTCGTTGTTTTTAGGGTTTCCATCTTCAGTATCTCAGA 251 Query 295 TTTTCACATCTGGGTATTCGTCTTGGTGCCTACATTATCTTGTTGACGTTTAGACTATTT 354 ||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||| |||| Sbjct 252 TTTTCACATCTGGGTCTTCGTCTCGGTGCCTACATTTTCTTGTTAACGTTTAGACAATTT 311 Query 355 CGAATTTGATGGTAGAAATGGAGGCTGTTGAGAGGAAACGATCCAGAGGAGGTTTTCTAA 414 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 312 CGAATTCGATGGTAGAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGTTTTCTAA 371 Query 415 ATATGTTTGATTGGCCTGGTAAATCCCGTAAGAAGCTCTTCTCCTCTAGCAGCAGCAGCT 474 |||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| Sbjct 372 ATATGTTTGATTGGCCTGGTAAATCCCGGAAGAAGTTCTTCTCCTCTA--A-CAGCAGCT 428 Query 475 CGAAACTCTCCGAAGGATCAAAGCAAGAGAAACAAAATGCTCAAAACCCCTCAAAGTCAT 534 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 429 CGAAACTCTCCGAAGCATCAAAGCAAGAAAAACAAAATGCTCAAAACCCCTCAAAGTCAT 488 Query 535 GGCCCTCTCTGATTGAG-GGAGATGAGATTGGAAAGAATTCAACTTACAATCCCAGAAGT 593 ||||||||| ||||||| || |||||||||| ||||||||||||||||||||| |||||| Sbjct 489 GGCCCTCTCCGATTGAGAGG-GATGAGATTGAAAAGAATTCAACTTACAATCCGAGAAGT 547 Query 594 GACTCGAGTTGTTCAACATCCACTCCCACTAGTGATGATGGACAAGGTTCCAAAGCTCCA 653 |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 548 GACTCGAGTTGTTCAACATCCACTGCCACTAGTGATGATGGACAAGGGTCCAAAGCTCCG 607 Query 654 AGTGTTG-TTGCGAGGCTCATGGGTTTAGAGTCTATACCTGTACCAAATGCCTTGGAGCC 712 |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 608 AGTG-TGATTGCGAGGCTCATGGGTTTAGAGTCTCTACCTGTACCAAATGCCTTGGAGCC 666 Query 713 CCGG-CGTAATCCTGATTTTGATCCATACTTCCTCAGATCCTCACGCAAGGCAAGCACAT 771 |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 667 CCGGTC-TAATCCTGATTTTGATCCATACTTCCTCAGATCCTCACGCAAGACAAGCACAT 725 Query 772 GGGATGCATATGAGAATTTGGGTTATGTAAATCTCCGCAGTGACTATGATGGTATTTCTT 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 GGGATGCATATGAGAATTTGGGTTATGTAAATCTCCGCAGTGACTATGATGGTATTTCTT 785 Query 832 GGGACCATTTGGATTCAAGAATGAACAAGGAGTGTAACCGGCCTATCGACCGCTTTCAAA 891 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 786 GGGACCATTTGGATTCAAGAATGAATAAAGAGTGTAACCGGCCTATCGACCGCTTTCAAA 845 Query 892 CCGAAACGTTACCTCCAAGGTCGGCTAAACCAATCCCTGTCACCCACAATAGGCTCTTGT 951 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 846 CCGAAACGTTACCTCCAAGGTCGGCTAAACCAATCCCTGTCACTCACAATAGGCTCTTGT 905 Query 952 CTCCTATCCGGAGTCCTGGGTTTGTTCAGTCCAGGAACCCTGCTTCTGTAATGGAAGAAG 1011 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 906 CTCCTATCCGAAGTCCTGGATTTGTTCAGTCCAGGAACCCTGCTTCTGTAATGGAAGCAG 965 Query 1012 CTTCGAGAATGATTGAACCAAGTCCTCGGGTAGTTGCTAAAACACGGTTTTCATCATCTG 1071 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 966 CTTCGAGAATGATTGAACCAAGTCCTCGGATAGTTGCTAAAACACGGTTTTCATCATCTG 1025 Query 1072 ATTCCTCTTCATCACTTCCAATGAAAATCAGAGATTTGAAAGAGAAACTAGAAGCTTCAC 1131 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1026 ATTCCTCTTCATCACTTCCAATGAGGATCAGAGATTTGAAAGAGAAACTAGAAGCTTCAC 1085 Query 1132 AGAAAGGACAAAGCCCTCAAATCTCAAATGGCACTTGCAATAATAAGTGCTTCAGAGGAA 1191 ||||||||||||| |||||| |||| ||||| || ||||| ||||||||||||||||||| Sbjct 1086 AGAAAGGACAAAGTCCTCAAGTCTCTAATGGTACCTGCAACAATAAGTGCTTCAGAGGAA 1145 Query 1192 AGCAAGATGAAAAGAGAACTACATTACCACTCAAGACACAAGAGCGAAATAATTTATTGG 1251 |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 1146 AGCAAGATGAAAAGAGAACTACATTATCACTCAAGACACAAGAGATAAATAAGTTATTGG 1205 Query 1252 GAGAAAGCAGGTTTGGTGGTTCGAAGGGTAAAGTGAAGCCGCCCTCTGTATCTGCACATG 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 GAGAAAGCAGGTTTGGTGGTTCGAAGGGTAAAGTGAAGCCGCCCTCTGTATCTGCACATG 1265 Query 1312 CAAAGGCCAATACTATTCACAAGCGAGACAGTTCAATGCTCTCAAATGGCTACAGAGACC 1371 ||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||| Sbjct 1266 CAAAGGCCAATACTATTCACAAGCGGGACAGTTCAGTGCTCTCAAGTGGCAACAGAGACC 1325 Query 1372 AAAAGAAGAAGGTGGAAACTAAGAACCGCATAGTAA-AAAGTGGTCTTAAAGAATCTTCT 1430 |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| Sbjct 1326 AAAAGAAGAAGGTGGAAACTAAGAACCGCATAGTAAGAAA-TGGTCTCAAAGAATCTTCT 1384 Query 1431 GCTAGCACTAGGAAAACCGTTGATAAGCCAAATAACCAGAAACAGAACCAATTTGCTGAA 1490 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1385 GCTAGCACTAGGAAAACCGTGGATAAGCCAAATAACCAGAAACAGAACCAATTTGCTGAA 1444 Query 1491 ACGTCTGTTTCAAATCAGAGAGGCAGAAAAGTGATGAAGAAAGTAAACAAAGTTTTGGTG 1550 || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1445 ACATCTGTTTCAAATCAGAGAGGCAGCAAAGTGATGAAGAAAGTAAACAAGGTTTTGGTG 1504 Query 1551 GAAAACGGAACTACAACTAAGAAGCCTGGTTTTACAGCAACATCAGCGAAAAAGAGCACT 1610 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1505 GAAAGCGGAACTACAACTAAGAAGCCTGGTTTTACAGCAACATCAGCGGAAAAGAGCACT 1564 Query 1611 TCTTCATCTTTGTCCCGCAAAAAGAATCTTTCCCGCAGCAAAAAACCGGCAAATGGGGTG 1670 ||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||| Sbjct 1565 GCTTCATCCTTGTCCCGCAAAAAGAATCTTCCCCGCAACAAAAAATCGGCAAATGGGGTG 1624 Query 1671 CAAGAAGCTGGAGTTAACAGTGATAAACGGATCAAAAAGGGTGAGAAGGTGATAAAATGT 1730 |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1625 CAAGAAGCTGGAGTCAACAGTGATAAACGGATGAAAAAGGGTGAGAAGTTGATAAAATGT 1684 Query 1731 AACATCACCGTCGATGGCGGGTTGAAGACAGGGGACGATGATCGAAAGAAGGACATGGAT 1790 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1685 AACATCACCGTTGATGGCGGGTTGAAGTCAGGGGACGATGATCGAAAGAAGGACATGGAT 1744 Query 1791 GTGATTTCGTTCACTTTCTCATCCCCGATCAAAGGTTTATCATC-AGATTCGCAATACTT 1849 ||||||||||||||||||||||| |||||||||||||||||||| | |||||| || || Sbjct 1745 GTGATTTCGTTCACTTTCTCATCTCCGATCAAAGGTTTATCATCCA-ATTCGCGATCCTC 1803 Query 1850 TTTAAAAAAGAATGATCAAGATGCAGAGTCAGCACTTTGTTTCAATAAGATAGATAGTGA 1909 | ||||||| |||||||||| |||| ||||||||| |||||||||||||||| ||||| Sbjct 1804 CATCAAAAAGACTGATCAAGATACAGAATCAGCACTTAGTTTCAATAAGATAGACAGTGA 1863 Query 1910 TTCTCTAAATTTTCTGTTGGAGAAAAAGCTCAGAGAACTAACCTCTAAGATGGAGTCATC 1969 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 1864 TTCTCTAAATTTTCTGTTGGAGAAAAAGCTCAGAGAGCTAACTTCTAAGATTGAGTCATC 1923 Query 1970 TTGCAGTAGTCTGACCCAAGAAGAAGAGTCTTCGGGTTCCATTACAAAGGATTGGGTGAA 2029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1924 TTGCAGTAGTCTGACCCAAGAAGAAGAGTCTTCGGGTTCCATTACAAAGGATTGGGTGAA 1983 Query 2030 TGGGACAAGATCATTGCCGTCAGATGATCAGGATAACGGTTTATCAGAAAGCGAATCTGA 2089 |||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1984 TGGGACGATATCATTGCCGTCAGATGATCTGGATAACGGTTTATCAGAGAGCGAATCTGT 2043 Query 2090 TTCTGACTATAGTAGTTCATTCTACAAAAAGAAAATATTCCAGGCAGAAGATGATGAGGA 2149 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 2044 TTCTGACTATAGTAGTTCATTCTACAAAAATAAAATATTCCAGGCAGAAGAAGATCAGGA 2103 Query 2150 AGTTAACAGTTTCAGCACTGCCGAAAATCTCCAAATCTCCTGCAGCACGAGTTTCTCAAG 2209 |||| |||| ||||||| || ||||||||||||||| |||||||||||||||||||||| Sbjct 2104 AGTTGACAGCTTCAGCAATGACGAAAATCTCCAAATTTCCTGCAGCACGAGTTTCTCAAA 2163 Query 2210 TTCACGCAATGATTATCACCATA-ACATTGAAGAAACCGAACTCTCAGAATCTGTTGCTT 2268 |||||||||||| |||| |||| | |||| ||||||||||||||||||||||| Sbjct 2164 TTCACGCAATGAATATCTCCATGGA-ATTGGAGAAACCGAACTCTCAGAATCTG------ 2216 Query 2269 TATCAGAAGCTGAAGAAGGTCATGACTGGGAGCTCGAGTACATAACGGAGATCATTGCCT 2328 | ||||| || |||||||||||||||||||||||||| |||||||| |||| Sbjct 2217 -A--AGAAG--GA-------CATGACTGGGAGCTCGAGTACATAACCGAGATCATAGCCT 2264 Query 2329 CTGGCCAACTGATGATTAAAGAATTCTCCTTGGGGATGGCTACTGATATATTACCTCTGA 2388 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2265 CTGGCCAACTGATGGTTAAAGAATTCTCCTTGGGGATGGCTACTGCTATATTACCTCTGA 2324 Query 2389 GC-TTATTCGATGAAACCGAAGGCAAGAGAGATGCTCGGGGAAAGATCGAGAGAAAAACA 2447 || || |||||||||| |||||||||||||||||||||||| ||||| |||||||||||| Sbjct 2325 GCCTT-TTCGATGAAATCGAAGGCAAGAGAGATGCTCGGGGCAAGATGGAGAGAAAAACA 2383 Query 2448 CTGTTTGACTTGGTGAATCAGTGGTTAACACTCAAATGCGAGCAGATGTTCATGGGAACC 2507 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2384 CTGTTCGACTTGGTGAATCAGTGCTTAACACTCAAATGCGAGCAGATGTTCATGGGAAGC 2443 Query 2508 TGCAAAGGAGTGTTG--GGG-AAACAAGACATTTTTCTTGAAAGGAG-AGAGATTTTGGC 2563 ||||||||||||||| ||| ||||||||||||||| ||||||| || |||||||||||| Sbjct 2444 TGCAAAGGAGTGTTGTTGGGGAAACAAGACATTTTTGTTGAAAG-AGGAGAGATTTTGGC 2502 Query 2564 AGACCAAGTGTTGAAAGAGGCTCAGGGATTGAAGAAGATGAGAGAGATGATGATG--G-A 2620 ||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| | | Sbjct 2503 AGAAGAAGTGAAGAAAGAGGTTCAAGGATTGAAGAAGATGAGAGAGATGATGATGATGGA 2562 Query 2621 TGAGCTAGTTGACAATGACATGAGTAGTTGTGAAGGGAAATGGCTTGATTACATGAGAGA 2680 |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 2563 TGAGCTAGTTGACAATAACATGAGTAGTTGTGAAGGGAAATGGCTTGATTACAAAAGAGA 2622 Query 2681 GACTTACGAAGAAGGAATTGAGATTGAAGAAGAGATTGTGTCCGAATTAGTTGATGACTT 2740 ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2623 GACGTATGAAGAAGGAGTTGAGATTGAAGAAGAGATTGTGTCCGAATTAGTTGATGACTT 2682 Query 2741 AATTAATGATCTTATCATGTGTTGTTGACACCAATCCTTTGGTCTTCTTCTCTCCAACAT 2800 | ||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||| Sbjct 2683 AGTTAATGATCTTATCATGTGTTTTTGACAACAACCCCTTGGTCTTCTTCTCTCCAACAT 2742 Query 2801 GAGAGTGAAATTGTTTTCTATAGGAT-A------AAAA-CAAGATTAGGCT-GAACTAAA 2851 |||||||||||||||||||||||||| | |||| |||||||||||| || ||| | Sbjct 2743 GAGAGTGAAATTGTTTTCTATAGGATTATCTGTTAAAAACAAGATTAGGCTCGA-CTACA 2801 Query 2852 TTCTGTCACAGGCTGAACTAAATTTTT-ATCTCTGAAATCGAAAATA 2897 ||| |||||| || ||| ||||| ||||||||||||| ||||| Sbjct 2802 TTCCCTCACAG--TG---TAA-TTTTTGATCTCTGAAATCGCAAATA 2842 > Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1 Length=3332 Score = 292 bits (158), Expect = 7e-78 Identities = 396/506 (78%), Gaps = 36/506 (7%) Strand=Plus/Plus Query 2268 TTA-TCAGAAGCTGAAG-AAGGTCATGACTGGGAGCTCGAGTACATAACGGAGATCATTG 2325 ||| |||||||| |||| |||| | |||||||||||| ||||||||| | |||||| | | Sbjct 2580 TTACTCAGAAGCCGAAGAAAGG-CTTGACTGGGAGCTTGAGTACATATCCGAGATCCTCG 2638 Query 2326 CCTCTGGCCAACTGATGATTAAAGAATTCTCCT-TGGGGATGGCTACTGATATATTACCT 2384 |||| |||||||||| | |||||||| | || |||||||||| ||||| |||||||| Sbjct 2639 GGTCTGACCAACTGATGGTGAAAGAATT-TGCTCTGGGGATGGCCACTGACGTATTACCT 2697 Query 2385 -CTGAGCTTATTCGATGAAACCGAAGG-CAAGAGAGATGC-TC-G--GGGAAAGATCGAG 2438 | |||| | || ||||||| ||||| | || |||| || | | | ||| ||| || Sbjct 2698 GC-GAGCCTCTTTGATGAAATGGAAGGCCGAG-GAGAAGCAACAGCAGCCAAA-ATCAAG 2754 Query 2439 AGAAAAACACTGTTTGACTTGGTGAATCAGTGGTTAACACTCAAATGCGAGCA-GATGTT 2497 ||||| ||||||||||| || || ||| | || ||| | |||||||||||| | |||||| Sbjct 2755 AGAAAGACACTGTTTGATTTTGTCAATAATTGCTTAGCGCTCAAATGCGAG-AGGATGTT 2813 Query 2498 CATGGGAACCTGCAAAGGAG-TGTTGGGGAAA--CAAGACATTTT-TCTTGAAAGGAGAG 2553 ||||| | ||||| ||| | | ||||| ||| | || | |||| | ||| || | || Sbjct 2814 TATGGGTAGCTGCAGAGG-GCTATTGGGCAAAGGCGAG-C-TTTTGT-TTG-AA-CAAAG 2867 Query 2554 AGATT--TTGGCAGACCAAGTGTTGAAAGAGGCTCA-GGGATTGAAGAAGATGAGAGAGA 2610 ||||| || ||||| || || | |||| ||| ||| ||||||||||||||||||| Sbjct 2868 AGATTGGTTAGCAGAAGAACTGAACAGAGAGATTCATGGG-TTGAAGAAGATGAGAGAGA 2926 Query 2611 TGATGATGGATGAGCTAGTTGACAATGACATGAGTAGTTGT-GAAGGGAAATGGCTTGAT 2669 |||||||||||||||| |||||||| || ||||| |||| | ||||||| ||||||||| Sbjct 2927 TGATGATGGATGAGCTTGTTGACAAAGAAATGAGCAGTT-TCGAAGGGAGGTGGCTTGAT 2985 Query 2670 TAC-ATGAGAGAGACTTACGAAGAAGGAATTGAGATTGAAGAAGAGATTGTGTCCGA-AT 2727 | | | ||||||||| || |||||||| ||||| ||||| | |||||| || || | || Sbjct 2986 TTCGA-GAGAGAGACATATGAAGAAGGCATTGACATTGAGGGAGAGATAGTCTCT-ACAT 3043 Query 2728 TAGTTGATGACTTAATTAATGATCTT 2753 | |||||||| ||| ||||||||||| Sbjct 3044 TGGTTGATGATTTAGTTAATGATCTT 3069 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109471364130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5