BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05750.1
Length=2900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1 3877 0.0
Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1 292 7e-78
> Ahg477867 jgi|Araly1|477867|fgenesh2_kg.3__568__AT3G05750.1
Length=2842
Score = 3877 bits (2099), Expect = 0.0
Identities = 2501/2687 (93%), Gaps = 60/2687 (2%)
Strand=Plus/Plus
Query 235 AGAGAGACGAAAGTGAAAGACTTTCGTTGTTTTTAGGGTTTCAATCTTCAGTATCTCAGA 294
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 192 AGAGAGACGAAAATGAAAGACTTTCGTTGTTTTTAGGGTTTCCATCTTCAGTATCTCAGA 251
Query 295 TTTTCACATCTGGGTATTCGTCTTGGTGCCTACATTATCTTGTTGACGTTTAGACTATTT 354
||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||| ||||
Sbjct 252 TTTTCACATCTGGGTCTTCGTCTCGGTGCCTACATTTTCTTGTTAACGTTTAGACAATTT 311
Query 355 CGAATTTGATGGTAGAAATGGAGGCTGTTGAGAGGAAACGATCCAGAGGAGGTTTTCTAA 414
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 312 CGAATTCGATGGTAGAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGTTTTCTAA 371
Query 415 ATATGTTTGATTGGCCTGGTAAATCCCGTAAGAAGCTCTTCTCCTCTAGCAGCAGCAGCT 474
|||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||||
Sbjct 372 ATATGTTTGATTGGCCTGGTAAATCCCGGAAGAAGTTCTTCTCCTCTA--A-CAGCAGCT 428
Query 475 CGAAACTCTCCGAAGGATCAAAGCAAGAGAAACAAAATGCTCAAAACCCCTCAAAGTCAT 534
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 429 CGAAACTCTCCGAAGCATCAAAGCAAGAAAAACAAAATGCTCAAAACCCCTCAAAGTCAT 488
Query 535 GGCCCTCTCTGATTGAG-GGAGATGAGATTGGAAAGAATTCAACTTACAATCCCAGAAGT 593
||||||||| ||||||| || |||||||||| ||||||||||||||||||||| ||||||
Sbjct 489 GGCCCTCTCCGATTGAGAGG-GATGAGATTGAAAAGAATTCAACTTACAATCCGAGAAGT 547
Query 594 GACTCGAGTTGTTCAACATCCACTCCCACTAGTGATGATGGACAAGGTTCCAAAGCTCCA 653
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 548 GACTCGAGTTGTTCAACATCCACTGCCACTAGTGATGATGGACAAGGGTCCAAAGCTCCG 607
Query 654 AGTGTTG-TTGCGAGGCTCATGGGTTTAGAGTCTATACCTGTACCAAATGCCTTGGAGCC 712
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 608 AGTG-TGATTGCGAGGCTCATGGGTTTAGAGTCTCTACCTGTACCAAATGCCTTGGAGCC 666
Query 713 CCGG-CGTAATCCTGATTTTGATCCATACTTCCTCAGATCCTCACGCAAGGCAAGCACAT 771
|||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 667 CCGGTC-TAATCCTGATTTTGATCCATACTTCCTCAGATCCTCACGCAAGACAAGCACAT 725
Query 772 GGGATGCATATGAGAATTTGGGTTATGTAAATCTCCGCAGTGACTATGATGGTATTTCTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GGGATGCATATGAGAATTTGGGTTATGTAAATCTCCGCAGTGACTATGATGGTATTTCTT 785
Query 832 GGGACCATTTGGATTCAAGAATGAACAAGGAGTGTAACCGGCCTATCGACCGCTTTCAAA 891
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 786 GGGACCATTTGGATTCAAGAATGAATAAAGAGTGTAACCGGCCTATCGACCGCTTTCAAA 845
Query 892 CCGAAACGTTACCTCCAAGGTCGGCTAAACCAATCCCTGTCACCCACAATAGGCTCTTGT 951
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 846 CCGAAACGTTACCTCCAAGGTCGGCTAAACCAATCCCTGTCACTCACAATAGGCTCTTGT 905
Query 952 CTCCTATCCGGAGTCCTGGGTTTGTTCAGTCCAGGAACCCTGCTTCTGTAATGGAAGAAG 1011
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 906 CTCCTATCCGAAGTCCTGGATTTGTTCAGTCCAGGAACCCTGCTTCTGTAATGGAAGCAG 965
Query 1012 CTTCGAGAATGATTGAACCAAGTCCTCGGGTAGTTGCTAAAACACGGTTTTCATCATCTG 1071
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 966 CTTCGAGAATGATTGAACCAAGTCCTCGGATAGTTGCTAAAACACGGTTTTCATCATCTG 1025
Query 1072 ATTCCTCTTCATCACTTCCAATGAAAATCAGAGATTTGAAAGAGAAACTAGAAGCTTCAC 1131
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1026 ATTCCTCTTCATCACTTCCAATGAGGATCAGAGATTTGAAAGAGAAACTAGAAGCTTCAC 1085
Query 1132 AGAAAGGACAAAGCCCTCAAATCTCAAATGGCACTTGCAATAATAAGTGCTTCAGAGGAA 1191
||||||||||||| |||||| |||| ||||| || ||||| |||||||||||||||||||
Sbjct 1086 AGAAAGGACAAAGTCCTCAAGTCTCTAATGGTACCTGCAACAATAAGTGCTTCAGAGGAA 1145
Query 1192 AGCAAGATGAAAAGAGAACTACATTACCACTCAAGACACAAGAGCGAAATAATTTATTGG 1251
|||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 1146 AGCAAGATGAAAAGAGAACTACATTATCACTCAAGACACAAGAGATAAATAAGTTATTGG 1205
Query 1252 GAGAAAGCAGGTTTGGTGGTTCGAAGGGTAAAGTGAAGCCGCCCTCTGTATCTGCACATG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GAGAAAGCAGGTTTGGTGGTTCGAAGGGTAAAGTGAAGCCGCCCTCTGTATCTGCACATG 1265
Query 1312 CAAAGGCCAATACTATTCACAAGCGAGACAGTTCAATGCTCTCAAATGGCTACAGAGACC 1371
||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||||||
Sbjct 1266 CAAAGGCCAATACTATTCACAAGCGGGACAGTTCAGTGCTCTCAAGTGGCAACAGAGACC 1325
Query 1372 AAAAGAAGAAGGTGGAAACTAAGAACCGCATAGTAA-AAAGTGGTCTTAAAGAATCTTCT 1430
|||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct 1326 AAAAGAAGAAGGTGGAAACTAAGAACCGCATAGTAAGAAA-TGGTCTCAAAGAATCTTCT 1384
Query 1431 GCTAGCACTAGGAAAACCGTTGATAAGCCAAATAACCAGAAACAGAACCAATTTGCTGAA 1490
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GCTAGCACTAGGAAAACCGTGGATAAGCCAAATAACCAGAAACAGAACCAATTTGCTGAA 1444
Query 1491 ACGTCTGTTTCAAATCAGAGAGGCAGAAAAGTGATGAAGAAAGTAAACAAAGTTTTGGTG 1550
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1445 ACATCTGTTTCAAATCAGAGAGGCAGCAAAGTGATGAAGAAAGTAAACAAGGTTTTGGTG 1504
Query 1551 GAAAACGGAACTACAACTAAGAAGCCTGGTTTTACAGCAACATCAGCGAAAAAGAGCACT 1610
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1505 GAAAGCGGAACTACAACTAAGAAGCCTGGTTTTACAGCAACATCAGCGGAAAAGAGCACT 1564
Query 1611 TCTTCATCTTTGTCCCGCAAAAAGAATCTTTCCCGCAGCAAAAAACCGGCAAATGGGGTG 1670
||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 1565 GCTTCATCCTTGTCCCGCAAAAAGAATCTTCCCCGCAACAAAAAATCGGCAAATGGGGTG 1624
Query 1671 CAAGAAGCTGGAGTTAACAGTGATAAACGGATCAAAAAGGGTGAGAAGGTGATAAAATGT 1730
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1625 CAAGAAGCTGGAGTCAACAGTGATAAACGGATGAAAAAGGGTGAGAAGTTGATAAAATGT 1684
Query 1731 AACATCACCGTCGATGGCGGGTTGAAGACAGGGGACGATGATCGAAAGAAGGACATGGAT 1790
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1685 AACATCACCGTTGATGGCGGGTTGAAGTCAGGGGACGATGATCGAAAGAAGGACATGGAT 1744
Query 1791 GTGATTTCGTTCACTTTCTCATCCCCGATCAAAGGTTTATCATC-AGATTCGCAATACTT 1849
||||||||||||||||||||||| |||||||||||||||||||| | |||||| || ||
Sbjct 1745 GTGATTTCGTTCACTTTCTCATCTCCGATCAAAGGTTTATCATCCA-ATTCGCGATCCTC 1803
Query 1850 TTTAAAAAAGAATGATCAAGATGCAGAGTCAGCACTTTGTTTCAATAAGATAGATAGTGA 1909
| ||||||| |||||||||| |||| ||||||||| |||||||||||||||| |||||
Sbjct 1804 CATCAAAAAGACTGATCAAGATACAGAATCAGCACTTAGTTTCAATAAGATAGACAGTGA 1863
Query 1910 TTCTCTAAATTTTCTGTTGGAGAAAAAGCTCAGAGAACTAACCTCTAAGATGGAGTCATC 1969
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1864 TTCTCTAAATTTTCTGTTGGAGAAAAAGCTCAGAGAGCTAACTTCTAAGATTGAGTCATC 1923
Query 1970 TTGCAGTAGTCTGACCCAAGAAGAAGAGTCTTCGGGTTCCATTACAAAGGATTGGGTGAA 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TTGCAGTAGTCTGACCCAAGAAGAAGAGTCTTCGGGTTCCATTACAAAGGATTGGGTGAA 1983
Query 2030 TGGGACAAGATCATTGCCGTCAGATGATCAGGATAACGGTTTATCAGAAAGCGAATCTGA 2089
|||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1984 TGGGACGATATCATTGCCGTCAGATGATCTGGATAACGGTTTATCAGAGAGCGAATCTGT 2043
Query 2090 TTCTGACTATAGTAGTTCATTCTACAAAAAGAAAATATTCCAGGCAGAAGATGATGAGGA 2149
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 2044 TTCTGACTATAGTAGTTCATTCTACAAAAATAAAATATTCCAGGCAGAAGAAGATCAGGA 2103
Query 2150 AGTTAACAGTTTCAGCACTGCCGAAAATCTCCAAATCTCCTGCAGCACGAGTTTCTCAAG 2209
|||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 2104 AGTTGACAGCTTCAGCAATGACGAAAATCTCCAAATTTCCTGCAGCACGAGTTTCTCAAA 2163
Query 2210 TTCACGCAATGATTATCACCATA-ACATTGAAGAAACCGAACTCTCAGAATCTGTTGCTT 2268
|||||||||||| |||| |||| | |||| |||||||||||||||||||||||
Sbjct 2164 TTCACGCAATGAATATCTCCATGGA-ATTGGAGAAACCGAACTCTCAGAATCTG------ 2216
Query 2269 TATCAGAAGCTGAAGAAGGTCATGACTGGGAGCTCGAGTACATAACGGAGATCATTGCCT 2328
| ||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 2217 -A--AGAAG--GA-------CATGACTGGGAGCTCGAGTACATAACCGAGATCATAGCCT 2264
Query 2329 CTGGCCAACTGATGATTAAAGAATTCTCCTTGGGGATGGCTACTGATATATTACCTCTGA 2388
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2265 CTGGCCAACTGATGGTTAAAGAATTCTCCTTGGGGATGGCTACTGCTATATTACCTCTGA 2324
Query 2389 GC-TTATTCGATGAAACCGAAGGCAAGAGAGATGCTCGGGGAAAGATCGAGAGAAAAACA 2447
|| || |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2325 GCCTT-TTCGATGAAATCGAAGGCAAGAGAGATGCTCGGGGCAAGATGGAGAGAAAAACA 2383
Query 2448 CTGTTTGACTTGGTGAATCAGTGGTTAACACTCAAATGCGAGCAGATGTTCATGGGAACC 2507
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2384 CTGTTCGACTTGGTGAATCAGTGCTTAACACTCAAATGCGAGCAGATGTTCATGGGAAGC 2443
Query 2508 TGCAAAGGAGTGTTG--GGG-AAACAAGACATTTTTCTTGAAAGGAG-AGAGATTTTGGC 2563
||||||||||||||| ||| ||||||||||||||| ||||||| || ||||||||||||
Sbjct 2444 TGCAAAGGAGTGTTGTTGGGGAAACAAGACATTTTTGTTGAAAG-AGGAGAGATTTTGGC 2502
Query 2564 AGACCAAGTGTTGAAAGAGGCTCAGGGATTGAAGAAGATGAGAGAGATGATGATG--G-A 2620
||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 2503 AGAAGAAGTGAAGAAAGAGGTTCAAGGATTGAAGAAGATGAGAGAGATGATGATGATGGA 2562
Query 2621 TGAGCTAGTTGACAATGACATGAGTAGTTGTGAAGGGAAATGGCTTGATTACATGAGAGA 2680
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2563 TGAGCTAGTTGACAATAACATGAGTAGTTGTGAAGGGAAATGGCTTGATTACAAAAGAGA 2622
Query 2681 GACTTACGAAGAAGGAATTGAGATTGAAGAAGAGATTGTGTCCGAATTAGTTGATGACTT 2740
||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 GACGTATGAAGAAGGAGTTGAGATTGAAGAAGAGATTGTGTCCGAATTAGTTGATGACTT 2682
Query 2741 AATTAATGATCTTATCATGTGTTGTTGACACCAATCCTTTGGTCTTCTTCTCTCCAACAT 2800
| ||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||
Sbjct 2683 AGTTAATGATCTTATCATGTGTTTTTGACAACAACCCCTTGGTCTTCTTCTCTCCAACAT 2742
Query 2801 GAGAGTGAAATTGTTTTCTATAGGAT-A------AAAA-CAAGATTAGGCT-GAACTAAA 2851
|||||||||||||||||||||||||| | |||| |||||||||||| || ||| |
Sbjct 2743 GAGAGTGAAATTGTTTTCTATAGGATTATCTGTTAAAAACAAGATTAGGCTCGA-CTACA 2801
Query 2852 TTCTGTCACAGGCTGAACTAAATTTTT-ATCTCTGAAATCGAAAATA 2897
||| |||||| || ||| ||||| ||||||||||||| |||||
Sbjct 2802 TTCCCTCACAG--TG---TAA-TTTTTGATCTCTGAAATCGCAAATA 2842
> Ahg489520 jgi|Araly1|489520|fgenesh2_kg.6__2654__AT5G26910.1
Length=3332
Score = 292 bits (158), Expect = 7e-78
Identities = 396/506 (78%), Gaps = 36/506 (7%)
Strand=Plus/Plus
Query 2268 TTA-TCAGAAGCTGAAG-AAGGTCATGACTGGGAGCTCGAGTACATAACGGAGATCATTG 2325
||| |||||||| |||| |||| | |||||||||||| ||||||||| | |||||| | |
Sbjct 2580 TTACTCAGAAGCCGAAGAAAGG-CTTGACTGGGAGCTTGAGTACATATCCGAGATCCTCG 2638
Query 2326 CCTCTGGCCAACTGATGATTAAAGAATTCTCCT-TGGGGATGGCTACTGATATATTACCT 2384
|||| |||||||||| | |||||||| | || |||||||||| ||||| ||||||||
Sbjct 2639 GGTCTGACCAACTGATGGTGAAAGAATT-TGCTCTGGGGATGGCCACTGACGTATTACCT 2697
Query 2385 -CTGAGCTTATTCGATGAAACCGAAGG-CAAGAGAGATGC-TC-G--GGGAAAGATCGAG 2438
| |||| | || ||||||| ||||| | || |||| || | | | ||| ||| ||
Sbjct 2698 GC-GAGCCTCTTTGATGAAATGGAAGGCCGAG-GAGAAGCAACAGCAGCCAAA-ATCAAG 2754
Query 2439 AGAAAAACACTGTTTGACTTGGTGAATCAGTGGTTAACACTCAAATGCGAGCA-GATGTT 2497
||||| ||||||||||| || || ||| | || ||| | |||||||||||| | ||||||
Sbjct 2755 AGAAAGACACTGTTTGATTTTGTCAATAATTGCTTAGCGCTCAAATGCGAG-AGGATGTT 2813
Query 2498 CATGGGAACCTGCAAAGGAG-TGTTGGGGAAA--CAAGACATTTT-TCTTGAAAGGAGAG 2553
||||| | ||||| ||| | | ||||| ||| | || | |||| | ||| || | ||
Sbjct 2814 TATGGGTAGCTGCAGAGG-GCTATTGGGCAAAGGCGAG-C-TTTTGT-TTG-AA-CAAAG 2867
Query 2554 AGATT--TTGGCAGACCAAGTGTTGAAAGAGGCTCA-GGGATTGAAGAAGATGAGAGAGA 2610
||||| || ||||| || || | |||| ||| ||| |||||||||||||||||||
Sbjct 2868 AGATTGGTTAGCAGAAGAACTGAACAGAGAGATTCATGGG-TTGAAGAAGATGAGAGAGA 2926
Query 2611 TGATGATGGATGAGCTAGTTGACAATGACATGAGTAGTTGT-GAAGGGAAATGGCTTGAT 2669
|||||||||||||||| |||||||| || ||||| |||| | ||||||| |||||||||
Sbjct 2927 TGATGATGGATGAGCTTGTTGACAAAGAAATGAGCAGTT-TCGAAGGGAGGTGGCTTGAT 2985
Query 2670 TAC-ATGAGAGAGACTTACGAAGAAGGAATTGAGATTGAAGAAGAGATTGTGTCCGA-AT 2727
| | | ||||||||| || |||||||| ||||| ||||| | |||||| || || | ||
Sbjct 2986 TTCGA-GAGAGAGACATATGAAGAAGGCATTGACATTGAGGGAGAGATAGTCTCT-ACAT 3043
Query 2728 TAGTTGATGACTTAATTAATGATCTT 2753
| |||||||| ||| |||||||||||
Sbjct 3044 TGGTTGATGATTTAGTTAATGATCTT 3069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109471364130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5