BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05760.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928185 jgi|Araly1|928185|scaffold_300642.1 1070 0.0
> Ahg928185 jgi|Araly1|928185|scaffold_300642.1
Length=649
Score = 1070 bits (579), Expect = 0.0
Identities = 612/628 (97%), Gaps = 1/628 (0%)
Strand=Plus/Plus
Query 72 TTGTTCTTCAATGGCTTCGAGCAACACGACTACTGGGGTTGATAATACGTTTAGAAAGAA 131
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 11 TTGTTCTTCAATGGCTTCGAGCAACACGACAACTGGGGTTGATAATACGTTTAGAAAGAA 70
Query 132 GTTTGATGTGGAAGAGTTTAAGGAGCGTGCTCGTGAACGCGAAAAGAAGGAATCGGATCG 191
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GTTCGATGAGGAAGAGTTTAAGGAGCGTGCTCGTGAACGCGAAAAGAAGGAATCGGATCG 130
Query 192 GTCTAAATCTCGGTCCAAAGGTCCTCCTGTGCAAAGAGCCCCTTTGAAGCATAGAGATTA 251
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TTCTAAGTCTCGGTCCAAAGGTCCTCCTGTGCAAAGAGCCCCTTTGAAGCATAGAGATTA 190
Query 252 TCATGTAGACCTAGAATCTCGTCTGGGCAAGACACAGGTCGTTACACCGGTAGCGCCTCT 311
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 191 TCATGTAGACCTAGAATCTCGTCTGGGCAAGACCCAGGTCGTTACACCGGTAGCTCCTCT 250
Query 312 AAGTCAGCAGGCTGGTTATTTCTGTCGCGTTTGTGATTGTGTTGTTAAAGATTCGGCAAA 371
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 251 AAGTCAGCAGGCCGGTTATTTCTGTCGCGTCTGTGATTGTGTTGTTAAAGATTCGGCAAA 310
Query 372 CTACTTGGATCACATAAATGGGAAAAAACATCAAAGGGCATTGGGGATGTCTATGCGGGT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTACTTGGATCACATAAATGGGAAAAAACATCAAAGGGCATTGGGGATGTCTATGCGGGT 370
Query 432 GGAGAGATCGTCACTTGAACAAGTCCAAGAGCGGTTCGAGGTTTTAAAGAAGCGGAAAGC 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 371 GGAGAGATCGTCACTTGAACAAGTCCAAGAGCGGTTCGAGGTTTTAAAGAAGCGGAAAAC 430
Query 492 GCCAGGAACTTTCACAGAACAAGATCTGGACGAACGCATCCgaaaacagcaagaagaaga 551
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 431 ACCAGGAACTTTCACAGAACAAGATCTGGACGAACGCATCCGGAAACAGCAAGAAGAAGA 490
Query 552 ggaagaactaaaaaggcagcgtagagagaaaaagaaagagaagaagaaagggaaggtggt 611
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 491 GGAAGAACTAAAAAGGCAGCGTAGAGAGAAAAAGAAGGAGAAGAAGAAAGGGAAGGTGAT 550
Query 612 ggaagaagagCCTGAGATGGATCCTGAGGTTGCAGAGATGATGGGATTTGGGGGCTTTGG 671
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 551 GGAAGAAGAGCCTGAGATGGATCCTGAAGTTGCAGAGATGATGGGATTTGGGGGCTTTGG 610
Query 672 ATCTTCaaaaaaaTCATGATGATTATAT 699
|||||||||||||||||||| |||||||
Sbjct 611 ATCTTCAAAAAAATCATGAT-ATTATAT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5