BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05770.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835 880 0.0
Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322 856 0.0
Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557 832 0.0
Ahg943052 jgi|Araly1|943052|scaffold_603596.1 608 3e-173
> Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835
Length=1092
Score = 880 bits (476), Expect = 0.0
Identities = 647/727 (89%), Gaps = 21/727 (3%)
Strand=Plus/Plus
Query 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 16 CCACTTCTAAACTTGCCTCTAACAACGACTCCGGAACTTATCAACAAGATTGAAACTTAC 75
Query 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188
||||| || | |||||||||||||||||||| ||| |||||| | |||||||| |||||
Sbjct 76 CTCAATAG-AAACTACACATGTCCTCATCAAAAAATAGAGAA--C-TCAAAGACCTCAAC 131
Query 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248
|||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 132 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 191
Query 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
||| || || | | ||||| ||| ||||||||| || |||||||| |||||||||||
Sbjct 192 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 248
Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
|||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 249 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 308
Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 309 GCTGAAAAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 368
Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 369 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428
Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 488
Query 546 CGGAGA-TCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603
|| | | |||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 489 CG-ACAATCAGGCTTCT-ACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 546
Query 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663
||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||||
Sbjct 547 CAAAAGAACTTGGAGAAACTTCTGACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCT 606
Query 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A- 721
||||||||| | |||||||||| ||||||||| |||||| ||||||| ||||||||| |
Sbjct 607 TTCCCGGTAGAAGAATCTCTTTTCTTCGATATCGGCTTTAAAAACAATAACTCATCTCAC 666
Query 722 A-CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777
| | |||||||| ||||||||||||| || |||||| |||||||||||||| | | || |
Sbjct 667 AACAGCCACAGCCAGACAGTTGGCTTTAATGTCAACTATGGCCTTCAACATCATCATTAT 726
Query 778 TCTCAAG 784
|||||||
Sbjct 727 TCTCAAG 733
> Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322
Length=1227
Score = 856 bits (463), Expect = 0.0
Identities = 642/726 (88%), Gaps = 21/726 (3%)
Strand=Plus/Plus
Query 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||
Sbjct 17 CACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATAAACAAGATTGAAACTTACC 76
Query 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189
|||| || | |||||||||||||||||||||||| |||||| | ||| |||| ||||||
Sbjct 77 TCAATAG-AAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAGAGACCTCAACT 132
Query 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGATT 249
|||| ||| | |||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 133 CTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCAATGATCAAAATT 192
Query 250 GGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTTT 306
|| || || | | ||||| ||| ||||||||| || |||||||| ||||||||||||
Sbjct 193 GG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCGAAATTCTATTTT 249
Query 307 GCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAGG 366
||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||
Sbjct 250 GCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAGG 309
Query 367 CTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAAT 426
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 310 CTGAAGAGAAAGATTGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTCAT 369
Query 427 TCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCACA 486
| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 370 ACTCGTGATGAAACTGGAATCCTCAATATCGAGTTGAGAAAACGTCCAACATTCTTCATA 429
Query 487 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCACC 546
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 430 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATCGCGATTTCACC 489
Query 547 GGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTGC 604
|| |||||||||| || || ||||||||||||| ||||||||||||||||||||||||
Sbjct 490 -GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTGC 547
Query 605 AAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCTT 664
|||||||||||||||||||||| || | |||||||||||||||||||| || |||||||
Sbjct 548 AAAAGAACTTGGAGAAGCTTCTAACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCTT 607
Query 665 TCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A-A 722
|||||||| | |||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 608 TCCCGGTAGAAGAATCTCTTTGCTTCGATATTGGCTTTGAAAACAACAACTCATCTCACA 667
Query 723 -CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-TT 778
| |||||| | |||||||||||| || |||||| |||||| ||| ||| | | || ||
Sbjct 668 ACAGCCACAACCTGACAGTTGGCTTTAATGTCAACTATGGCCATCAGCATCATCATTATT 727
Query 779 CTCAAG 784
||||||
Sbjct 728 CTCAAG 733
Score = 207 bits (112), Expect = 1e-52
Identities = 217/263 (83%), Gaps = 25/263 (10%)
Strand=Plus/Plus
Query 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 789 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 848
Query 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983
|| ||||| ||||| | ||||||||||||| | |||||||||||||||||| |||| |
Sbjct 849 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTCTCAGGTGGTTAAC-A 907
Query 984 -GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTATCGGATGAACC 1042
||| | | | | |||| |||||| ||||||| | || ||| ||||||||
Sbjct 908 TGCA--A-A-T-----G------GATTTCACCGGTTCACAGTATCGTAATCAGATGAACC 952
Query 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATACTTGAGAGTCAAGCATATGC- 1100
|||||||||||| ||||||||||| ||| |||| |||| || |||||||| |||||||
Sbjct 953 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGTTCAGAGTCAAACATATGCT 1011
Query 1101 --AGTACCTGATACACAAACTAA 1121
|||| ||||||||||||||||
Sbjct 1012 GCAGTAGCTGATACACAAACTAA 1034
> Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557
Length=1206
Score = 832 bits (450), Expect = 0.0
Identities = 639/727 (88%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130
|||||||| ||||||||||||||| |||||| |||||||| || ||||||| |||||
Sbjct 17 CACGTCTACGCTTGCCTCTAACAAAGGGTCCGGAGCTTATCAATAAAATTGAAAATTACC 76
Query 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189
|||| || | || |||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 77 TCAATAG-AAACAACACATGTCCTCATCAACAAACAGAGAA-T--TCAAAGACCTCAACT 132
Query 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATC-AAGAT 248
||| ||| | |||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 133 TTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCGAA-AT 191
Query 249 TGGCGAC-TGTGTCTTC-GTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
||| || || | | | |||| ||| |||||||||||| |||||||| |||||||||||
Sbjct 192 TGG-AACATG-GACCCCTGTTG-CAATAAACCCTGATGATATTGTGGCGAAATTCTATTT 248
Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
||| ||||| |||||| |||||||||||||||| |||||||||| |||||||||| ||
Sbjct 249 TGCTAAGAAAAAACTTATATGGGAGTTTCTCTTTGGAGAACCAGACACTAACATGCCAAG 308
Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 309 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATATCTCATCTTTTGAAGAGCGTATTTA 368
Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 369 TACACGTGATGAAACTGGGATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428
Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
|||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGA-T--GATTTCAC 485
Query 546 CGGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603
| || |||||||||| || || ||||||||||||| |||||||||||||||||||||||
Sbjct 486 C-GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 543
Query 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 544 CAAAAGAACTTGGAGAAGCTTCTGACTGATAGCTTCTGGTCCAAACTCTATAACGTCCCT 603
Query 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT--- 720
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 604 TTCCCGGTAGAAGAATCTCTTTTTTTCGATATGGGCTTTGAAAACAACAACTCATCTCGC 663
Query 721 AACGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777
||| |||||| | |||||||| |||| || |||||| |||||||||| ||| | | || |
Sbjct 664 AACAGCCACAACCAGACAGTTAGCTTTAATGTCAACTATGGCCTTCAGCATCATCATTAT 723
Query 778 TCTCAAG 784
|||||||
Sbjct 724 TCTCAAG 730
Score = 268 bits (145), Expect = 7e-71
Identities = 227/264 (86%), Gaps = 15/264 (6%)
Strand=Plus/Plus
Query 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 792 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 851
Query 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983
|| ||||| ||||| | ||||||||||||| | ||||||||| |||||||| ||||||
Sbjct 852 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTATCAGGTGGTTAACGA 911
Query 984 GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTA-TCGGATGAACC 1042
||||||||| || ||||| |||| |||||| ||||||| | ||| || ||||||||
Sbjct 912 GCATTATAA---CATGCAAATGGATTTCACCGGTTCACAGTATA-TTAATCAGATGAACC 967
Query 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATA-CTTGAGAGTCAAGCATATGC 1100
|||||||||||| ||||||||||| ||| |||| |||| || ||||| |||||||||||
Sbjct 968 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGCT-GAGAGCCAAGCATATGC 1025
Query 1101 ---AGTACCTGATACACAAACTAA 1121
|||||| ||||||||||||||
Sbjct 1026 TGCAGTACCAGATACACAAACTAA 1049
> Ahg943052 jgi|Araly1|943052|scaffold_603596.1
Length=589
Score = 608 bits (329), Expect = 3e-173
Identities = 433/482 (90%), Gaps = 11/482 (2%)
Strand=Plus/Plus
Query 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 37 CCACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATCAACAAGATTGAAACTTAC 96
Query 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188
||||| | | |||||||||||||||||||||||| |||||| | |||||||| ||||
Sbjct 97 CTCAATA-AAAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAAAGACCTCAAT 152
Query 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248
|||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 153 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 212
Query 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
||| || || | | ||||| ||| ||||||||| || |||||||| |||||||||||
Sbjct 213 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 269
Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
|||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 270 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 329
Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 330 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 389
Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 390 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 449
Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 450 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 509
Query 546 CG 547
||
Sbjct 510 CG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5