BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05770.1 Length=1548 Score E Sequences producing significant alignments: (Bits) Value Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835 880 0.0 Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322 856 0.0 Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557 832 0.0 Ahg943052 jgi|Araly1|943052|scaffold_603596.1 608 3e-173 > Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835 Length=1092 Score = 880 bits (476), Expect = 0.0 Identities = 647/727 (89%), Gaps = 21/727 (3%) Strand=Plus/Plus Query 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 16 CCACTTCTAAACTTGCCTCTAACAACGACTCCGGAACTTATCAACAAGATTGAAACTTAC 75 Query 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188 ||||| || | |||||||||||||||||||| ||| |||||| | |||||||| ||||| Sbjct 76 CTCAATAG-AAACTACACATGTCCTCATCAAAAAATAGAGAA--C-TCAAAGACCTCAAC 131 Query 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248 |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| || Sbjct 132 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 191 Query 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305 ||| || || | | ||||| ||| ||||||||| || |||||||| ||||||||||| Sbjct 192 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 248 Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365 |||||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct 249 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 308 Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 309 GCTGAAAAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 368 Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485 | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 369 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428 Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 488 Query 546 CGGAGA-TCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603 || | | |||||||||| | || ||||||||||||| ||||||||||||||||||||||| Sbjct 489 CG-ACAATCAGGCTTCT-ACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 546 Query 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663 ||||||||||||||||| |||||||| | |||||||||||||||||||| || |||||| Sbjct 547 CAAAAGAACTTGGAGAAACTTCTGACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCT 606 Query 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A- 721 ||||||||| | |||||||||| ||||||||| |||||| ||||||| ||||||||| | Sbjct 607 TTCCCGGTAGAAGAATCTCTTTTCTTCGATATCGGCTTTAAAAACAATAACTCATCTCAC 666 Query 722 A-CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777 | | |||||||| ||||||||||||| || |||||| |||||||||||||| | | || | Sbjct 667 AACAGCCACAGCCAGACAGTTGGCTTTAATGTCAACTATGGCCTTCAACATCATCATTAT 726 Query 778 TCTCAAG 784 ||||||| Sbjct 727 TCTCAAG 733 > Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322 Length=1227 Score = 856 bits (463), Expect = 0.0 Identities = 642/726 (88%), Gaps = 21/726 (3%) Strand=Plus/Plus Query 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130 |||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||| Sbjct 17 CACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATAAACAAGATTGAAACTTACC 76 Query 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189 |||| || | |||||||||||||||||||||||| |||||| | ||| |||| |||||| Sbjct 77 TCAATAG-AAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAGAGACCTCAACT 132 Query 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGATT 249 |||| ||| | |||||||||||||||||||||||||||||||||| | |||||| ||| Sbjct 133 CTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCAATGATCAAAATT 192 Query 250 GGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTTT 306 || || || | | ||||| ||| ||||||||| || |||||||| |||||||||||| Sbjct 193 GG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCGAAATTCTATTTT 249 Query 307 GCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAGG 366 ||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| Sbjct 250 GCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAGG 309 Query 367 CTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAAT 426 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 310 CTGAAGAGAAAGATTGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTCAT 369 Query 427 TCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCACA 486 | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| | Sbjct 370 ACTCGTGATGAAACTGGAATCCTCAATATCGAGTTGAGAAAACGTCCAACATTCTTCATA 429 Query 487 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCACC 546 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 430 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATCGCGATTTCACC 489 Query 547 GGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTGC 604 || |||||||||| || || ||||||||||||| |||||||||||||||||||||||| Sbjct 490 -GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTGC 547 Query 605 AAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCTT 664 |||||||||||||||||||||| || | |||||||||||||||||||| || ||||||| Sbjct 548 AAAAGAACTTGGAGAAGCTTCTAACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCTT 607 Query 665 TCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A-A 722 |||||||| | |||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 608 TCCCGGTAGAAGAATCTCTTTGCTTCGATATTGGCTTTGAAAACAACAACTCATCTCACA 667 Query 723 -CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-TT 778 | |||||| | |||||||||||| || |||||| |||||| ||| ||| | | || || Sbjct 668 ACAGCCACAACCTGACAGTTGGCTTTAATGTCAACTATGGCCATCAGCATCATCATTATT 727 Query 779 CTCAAG 784 |||||| Sbjct 728 CTCAAG 733 Score = 207 bits (112), Expect = 1e-52 Identities = 217/263 (83%), Gaps = 25/263 (10%) Strand=Plus/Plus Query 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 789 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 848 Query 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983 || ||||| ||||| | ||||||||||||| | |||||||||||||||||| |||| | Sbjct 849 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTCTCAGGTGGTTAAC-A 907 Query 984 -GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTATCGGATGAACC 1042 ||| | | | | |||| |||||| ||||||| | || ||| |||||||| Sbjct 908 TGCA--A-A-T-----G------GATTTCACCGGTTCACAGTATCGTAATCAGATGAACC 952 Query 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATACTTGAGAGTCAAGCATATGC- 1100 |||||||||||| ||||||||||| ||| |||| |||| || |||||||| ||||||| Sbjct 953 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGTTCAGAGTCAAACATATGCT 1011 Query 1101 --AGTACCTGATACACAAACTAA 1121 |||| |||||||||||||||| Sbjct 1012 GCAGTAGCTGATACACAAACTAA 1034 > Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557 Length=1206 Score = 832 bits (450), Expect = 0.0 Identities = 639/727 (88%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130 |||||||| ||||||||||||||| |||||| |||||||| || ||||||| ||||| Sbjct 17 CACGTCTACGCTTGCCTCTAACAAAGGGTCCGGAGCTTATCAATAAAATTGAAAATTACC 76 Query 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189 |||| || | || |||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 77 TCAATAG-AAACAACACATGTCCTCATCAACAAACAGAGAA-T--TCAAAGACCTCAACT 132 Query 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATC-AAGAT 248 ||| ||| | |||||||||||||||||||||||||||||||||||| |||| || || Sbjct 133 TTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCGAA-AT 191 Query 249 TGGCGAC-TGTGTCTTC-GTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305 ||| || || | | | |||| ||| |||||||||||| |||||||| ||||||||||| Sbjct 192 TGG-AACATG-GACCCCTGTTG-CAATAAACCCTGATGATATTGTGGCGAAATTCTATTT 248 Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365 ||| ||||| |||||| |||||||||||||||| |||||||||| |||||||||| || Sbjct 249 TGCTAAGAAAAAACTTATATGGGAGTTTCTCTTTGGAGAACCAGACACTAACATGCCAAG 308 Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425 ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 309 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATATCTCATCTTTTGAAGAGCGTATTTA 368 Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485 | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 369 TACACGTGATGAAACTGGGATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428 Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545 |||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGA-T--GATTTCAC 485 Query 546 CGGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603 | || |||||||||| || || ||||||||||||| ||||||||||||||||||||||| Sbjct 486 C-GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 543 Query 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663 |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 544 CAAAAGAACTTGGAGAAGCTTCTGACTGATAGCTTCTGGTCCAAACTCTATAACGTCCCT 603 Query 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT--- 720 ||||||||| | |||||||||| |||||||| |||||||||||||||||||||||| Sbjct 604 TTCCCGGTAGAAGAATCTCTTTTTTTCGATATGGGCTTTGAAAACAACAACTCATCTCGC 663 Query 721 AACGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777 ||| |||||| | |||||||| |||| || |||||| |||||||||| ||| | | || | Sbjct 664 AACAGCCACAACCAGACAGTTAGCTTTAATGTCAACTATGGCCTTCAGCATCATCATTAT 723 Query 778 TCTCAAG 784 ||||||| Sbjct 724 TCTCAAG 730 Score = 268 bits (145), Expect = 7e-71 Identities = 227/264 (86%), Gaps = 15/264 (6%) Strand=Plus/Plus Query 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 792 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 851 Query 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983 || ||||| ||||| | ||||||||||||| | ||||||||| |||||||| |||||| Sbjct 852 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTATCAGGTGGTTAACGA 911 Query 984 GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTA-TCGGATGAACC 1042 ||||||||| || ||||| |||| |||||| ||||||| | ||| || |||||||| Sbjct 912 GCATTATAA---CATGCAAATGGATTTCACCGGTTCACAGTATA-TTAATCAGATGAACC 967 Query 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATA-CTTGAGAGTCAAGCATATGC 1100 |||||||||||| ||||||||||| ||| |||| |||| || ||||| ||||||||||| Sbjct 968 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGCT-GAGAGCCAAGCATATGC 1025 Query 1101 ---AGTACCTGATACACAAACTAA 1121 |||||| |||||||||||||| Sbjct 1026 TGCAGTACCAGATACACAAACTAA 1049 > Ahg943052 jgi|Araly1|943052|scaffold_603596.1 Length=589 Score = 608 bits (329), Expect = 3e-173 Identities = 433/482 (90%), Gaps = 11/482 (2%) Strand=Plus/Plus Query 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct 37 CCACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATCAACAAGATTGAAACTTAC 96 Query 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188 ||||| | | |||||||||||||||||||||||| |||||| | |||||||| |||| Sbjct 97 CTCAATA-AAAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAAAGACCTCAAT 152 Query 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248 |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| || Sbjct 153 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 212 Query 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305 ||| || || | | ||||| ||| ||||||||| || |||||||| ||||||||||| Sbjct 213 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 269 Query 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365 |||||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct 270 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 329 Query 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 330 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 389 Query 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485 | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 390 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 449 Query 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 450 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 509 Query 546 CG 547 || Sbjct 510 CG 511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57973352890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5