BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05800.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477874 jgi|Araly1|477874|fgenesh2_kg.3__575__AT3G05800.1 1146 0.0
> Ahg477874 jgi|Araly1|477874|fgenesh2_kg.3__575__AT3G05800.1
Length=808
Score = 1146 bits (620), Expect = 0.0
Identities = 752/814 (92%), Gaps = 15/814 (2%)
Strand=Plus/Plus
Query 148 GTGGTTCTATAGATTTCTTGTGAATGTCTTCTGAACAAGGAAATGGATCGAATCCTTCCA 207
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGTTCTACAAAAGTCTTGTGAATGTCTTCTGAACAAGGAAATGGATCGAATCCTTCCA 60
Query 208 CGTCACCGGAGGTAGAAGGGACTAAAACAATCCCCTTTCGCCGGAGATTGCAAAGAGGAC 267
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 61 CGTCGCCGGAGGTAGAAGGGACTAAAACAATCCCTTTTCGCCGGAGATTGCAAAGAGCAC 120
Query 268 AAAGAGTTTTCGCTCCAAAGCTGATGGAGGCTCTACGTCGATCAAGGGTAAGCTCTGAAG 327
||||||| || ||||||||| ||||||||||||| |||||||||||| ||||||| ||||
Sbjct 121 AAAGAGTGTTGGCTCCAAAGTTGATGGAGGCTCTCCGTCGATCAAGGATAAGCTCGGAAG 180
Query 328 AAGCTCCGGTAAGGCATCTTAGTCGTAGATGGAGAGCCACAACGGCGCAGAAGGTATATT 387
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTCCGGCGAGCCATCTTAGTCGTAGATGGAGAGCCACAACGGCGCAGAAGGTATATT 240
Query 388 CCCTAAAGCTCTACGACGCTCTTCAACGATCGCGGCGGAGCGCAACAGTCCGGGACACGG 447
|| | ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 241 CCTTGAAGCTCTACGATGCTCTTCAGCGATCGCGGCGCAGCGCAACAGTTCGGGACACGG 300
Query 448 CCGACAAAGTCCTTGCGACGACCGCTCGTGGTGCAACTCGGTGGAGCCGAGCCATTTTGG 507
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 301 CCGACAAAGTCCTTGCGACGACGGCTCGTGGTGTAACTCGGTGGAGCCGAGCCATATTGG 360
Query 508 TTAGTCGATTCGGAACGAGTCTGAGGCGGCGTAGGAATACCAAACCGGCGTCG-GCATTA 566
| ||||||||||| ||||||||||||||||| |||||||| |||||||||| | |||||
Sbjct 361 TGAGTCGATTCGGGACGAGTCTGAGGCGGCGCAGGAATACAAAACCGGCGT-GTGCATTG 419
Query 567 GCTGCGGCGATCAGGGGAAGTGGTGGAAGTGGGAGGAGGAGGAAGTTATCGGCGGTGGGA 626
|| |||||| |||||||||||||||| || | |||||||||||| | ||||||||||||
Sbjct 420 GCAGCGGCGGTCAGGGGAAGTGGTGGGAG-G--AGGAGGAGGAAGGTGTCGGCGGTGGGA 476
Query 627 AATCGGGTCCGGGTTTTGGGTGGGTTGGTGCCGGGTTGCCGGAGAACGGCGTTACCGGAG 686
| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 477 AGTCGGGTCCGGGTTTTGGGTGGGTTGGTGCCGGGTTGCCGGAGAACAGCCTTACCGGAG 536
Query 687 CTTTTGGACGAGACAGCAGATTACATAGCGGCTTTGGAAATGCAAGTCCGAGCCATGACA 746
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 CTTTTGGATGAGACAGCAGATTACATAGCGGCGTTGGAAATGCAAGTCCGAGCCATGACA 596
Query 747 GCTCTATCAAAGATTCTGTCGGAGCTTCAGCCGTCTACTAATCTCGGCTCGGCTTTATAG 806
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct 597 GCTCTATCAAAGATTCTGTCTGAGTTTCAGCCGTCTACTAAACTCGGCTCGGCTTTATAG 656
Query 807 CCGAGTGTATAAGCCGATG------AA--TTTGTTTCAATTAATTCTTTTACGATTTTAT 858
||||||| ||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 657 CCGAGTGCATAAGCCGATGGTGTGTAAAATTTGTTTCAATTAATTCTTTTACGATTATAT 716
Query 859 CGTGGGAATGTCTTATTGTTTTTAATGATTTGTTTGCCCTGGaaaaaaaaaaTTGTCAAA 918
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 717 CGTGGGAATGTCTTATTGTCTTTAATGATTTGTTTGCCCTG-AAAAAAAAAAT-GTCAAA 774
Query 919 ATCATCACGAGTTGGACGAAAATACTATGTTTTT 952
|||||||||||||||| |||||||||||||||||
Sbjct 775 ATCATCACGAGTTGGAGGAAAATACTATGTTTTT 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5