BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05810.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477875 jgi|Araly1|477875|fgenesh2_kg.3__576__AT3G05810.1 656 0.0
Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124 250 1e-65
> Ahg477875 jgi|Araly1|477875|fgenesh2_kg.3__576__AT3G05810.1
Length=599
Score = 656 bits (355), Expect = 0.0
Identities = 436/475 (92%), Gaps = 5/475 (1%)
Strand=Plus/Plus
Query 58 CCGACGATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCTAGGGACAGCGCAA 117
||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 18 CCGGCGATGGCGTGGACACGACTGGTTCAGAGCGCGAGAGCAGCTCTAGGGACAACGCAC 77
Query 118 TCGTGCTCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAACCAGCCACTTATTTCGTG 177
||| | ||||||||||||||||| ||||| || |||||||||||| ||||||||||||
Sbjct 78 TCGAGTTCGACTCTTGGCCTCCCCAGATT---CTACTCCAAACCAGCTACTTATTTCGTG 134
Query 178 AAGGTAGGGATTCCAGAGTTTCTAGGTGGGATTGGAAGAGGAGCTGAGACTCACATTGCC 237
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 135 AAGGTTGGGATTCCAGAGTTTCTAGGCGGGATTGGCAGAGGAGCTGAGACTCACATTGCC 194
Query 238 AAAATTGAAACTGAGATTGGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGACTC 297
||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||
Sbjct 195 AAAATTGAAACTGAGATCGGTGACCTTCATAAGCTGCTTGTCACCCGTACCCTCAGACTC 254
Query 298 AAGAAACTTGGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAAATAC 357
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 255 AAGAAGCTTGGCATTCCTTGCAAACATCGGAAACTTATACTCAAGTATGGCCAGAAATAC 314
Query 358 AGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGATCAAGTCTCTATGTT 417
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGGTTGGGGCTGTGGAAACCTAGAGCTGACGCTATTAAGGCCTGATCAAGTCTCTATGTT 374
Query 418 GTAACTGTGAGTCTCTCGACTGCCGGAATAAGCTCTAGTACTTGAATGATCATTGTCAAA 477
| |||||| |||||||||||||| |||||||||| |||||||| |||| |||||||||||
Sbjct 375 G-AACTGTCAGTCTCTCGACTGCTGGAATAAGCTGTAGTACTTAAATGGTCATTGTCAAA 433
Query 478 CCAGTTCAGTATTGGACAAAATAGACAGTAGAAGTAATGTTGGTTTTG-ATGTTT 531
||| ||||||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct 434 CCATTTCAGTATTGGACAATATAGACTGTACAAGTAATGTTGGTTTTTTATGTTT 488
> Ahg326904 jgi|Araly1|326904|fgenesh1_pm.C_scaffold_6002124
Length=339
Score = 250 bits (135), Expect = 1e-65
Identities = 281/349 (81%), Gaps = 20/349 (6%)
Strand=Plus/Plus
Query 64 ATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCT-AGGGAC-AGCGCAATCGT 121
|||||||||| ||| |||| |||||||||||| | ||||| || | | | | ||| ||
Sbjct 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTCTAAGAGCCGAAC-CAA-CG- 57
Query 122 GC-TCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAA--C-CAGC-CACTTATTTCGT 176
| ||||||||| | |||||||||| || ||||||| | | || | ||||| |||
Sbjct 58 CCGTCGACTCTTAACTTCCCTAGATT---CTACTCCAAATCCGCCGCTC-CTTATCCCGT 113
Query 177 GAAGGTAGGGATTCCAGAGTTTCTAG-GTGGGATTGGAAGAGGAGCTGAGACTCACATTG 235
||| || || ||||| |||||| | | ||||||||||| |||||| ||||||||| ||||
Sbjct 114 GAAAGTTGGAATTCCTGAGTTT-TTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTG 172
Query 236 CCAAAATTGAAACTGAGATT-GGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGA 294
| ||| ||||||| ||| || || || |||| ||||| || ||||| ||||| || |||
Sbjct 173 CTAAACTTGAAACCGAG-TTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGA 231
Query 295 CTCAAGAAACTT-GGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAA 353
|||||| || || || || ||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 232 CTCAAG-AAGTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAA 290
Query 354 ATACAGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGA 402
||||||| |||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 291 ATACAGGCTAGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5