BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05820.1
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928191 jgi|Araly1|928191|scaffold_300648.1 3107 0.0
> Ahg928191 jgi|Araly1|928191|scaffold_300648.1
Length=1942
Score = 3107 bits (1682), Expect = 0.0
Identities = 1845/1926 (96%), Gaps = 2/1926 (0%)
Strand=Plus/Plus
Query 60 TAGGTCTTGGACCCTGATTATGAATGCCATCACTTTTCTTGGAAATTCAACGATGATACC 119
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TAGGTGTTGTATCCTGATTATGAATGCCATCACTTTTCTTGGAAATTCAACGATGATACC 61
Query 120 TTCACAATGTATTCTCCGAGCGTTTACAAGAATCTCTCCATCTAAATACATCCGAGACAC 179
|||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 62 TTCACATTGCATTCTCCGAGCGTTTTCGAGAATCTCTCCATCTAAATACATCCGAGACAC 121
Query 180 CTCGTTTCGATCCTATCCTTCTCGGTTCTCAAGCTGCATCAACCAATACAGGAATGCAGA 239
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 122 CGCGTTTCGATCCTATCCTTCTCGGTTCTCAAGCTGCAACAACCAATACAGGAATGCAGA 181
Query 240 TTCAGATAGAATCATCAGACCGACAAATGCTGTGCCATTTTGTACCGACAGGCAGAGCTC 299
||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||
Sbjct 182 TTCAGATAGAATCATCAAACTGAGAAATGTTGTGCCATTTTGTACCGACAGGCAAAGCTC 241
Query 300 TGTTACAGCTCAGGTTGTTTCTGAGGCAAGAAGTCACTCTGCTTCCACCACATGCGCAAA 359
||||||||||||||||||||||||||||||||||| |||||| || || || ||||||||
Sbjct 242 TGTTACAGCTCAGGTTGTTTCTGAGGCAAGAAGTCTCTCTGCATCGACGACCTGCGCAAA 301
Query 360 TGACACGACCTTGGATCAGATTTACACCAAGAACGGCTTAAATGTGAAACCTTTAGTTGT 419
|||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct 302 TGACACGACCTTGGATCAAATATACACGAAGAACGGTTTAAATGTGAAACCTTTAGTTGT 361
Query 420 CGAGAGGTTaaaaagagatgagaaagatgaagaggcggtcaatgaagatga-agaaggcg 478
||||||||||||| || | |||||||||||||||| |||||||| |||||| | || |||
Sbjct 362 CGAGAGGTTAAAAGGACACGAGAAAGATGAAGAGGTGGTCAATGGAGATGACA-AAAGCG 420
Query 479 taaagagagatgGTTTCGAGGGTGTTAAGTGTAATGACGTCGAGGAAGAGGCATGGAGAT 538
|||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 421 TAAACAGAGATGGTTTCGAGGGTGTTAAGAGTAATGACTTAGAGGAAGAGGCATGGAGAT 480
Query 539 TGCTGAGGGATTCAATAGTGACATACTGCGATTCTCCTGTAGGAACGGTGGCTGCTAAAG 598
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TGCTGAGGGATTCAGTAGTGACATACTGCGATTCGCCTGTAGGAACGGTGGCTGCTAAAG 540
Query 599 ATCCAACTGATACAACGCCATCAAACTACGATCAGGTCTTTATTAGGGATTTTGTACCTT 658
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCCAACTGACACAATGCCATCAAACTACGATCAGGTCTTTATTAGGGATTTTGTACCTT 600
Query 659 CGGCTTTGGCTTTTCTCCTGAAGGGAGAAAGCGAAATTGTTCGAAACTTCCTTCTCCACA 718
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CAGCTCTGGCTTTTCTGCTGAAGGGAGAAAGCGAAATTGTTCGAAACTTCCTTCTTCACA 660
Query 719 CGTTGCAGTTGCAGAGTTGGGAGAAAACAGTTGATTGTTATAGTCCAGGACAAGGGTTAA 778
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGCTGCAGTTGCAGAGTTGGGAGAAAACAGTTGATTGTTATAGTCCAGGACAAGGGTTAA 720
Query 779 TGCCTGCGAGTTTCAAAGTCAGAACTTTACCGCTTGAAGAGGACAAGTTCGAAGAGGTTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGCCTGCGAGTTTCAAAGTCAGAACTTTACCGCTTGAAGAGGACAAGTTCGAAGAGGTTC 780
Query 839 TGGATCCAGATTTTGGCGAAGCAGCTATAGGTCGTGTTGCTCCCGTTGATTCTGGTTTAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGATCCAGATTTTGGCGAAGCAGCTATAGGTCGTGTTGCTCCCGTTGATTCTGGTTTAT 840
Query 899 GGTGGATAATCTTGTTGAGGGCATACGGGAAAATCACAGGAGATTACTCGCTTCAAGAGA 958
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 GGTGGATAATATTGTTGAGGGCATACGGGAAAATCACAGGGGATTACTCGCTTCAAGAGA 900
Query 959 GGATAGATGTGCAGACAGGGATAAAGATGATTGCAAACCTGTGTTTAGCAGATGGGTTTG 1018
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGATAGATGTTCAAACAGGGATAAAGATGATTGCAAACCTGTGTTTAGCAGATGGGTTTG 960
Query 1019 ATATGTTTCCCACACTGTTGGTCACTGATGGCTCTTGTATGATAGATCGACGTATGGGTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATATGTTTCCCACACTGTTGGTCACTGATGGCTCTTGTATGATAGATCGACGTATGGGTA 1020
Query 1079 TCCACGGTCACCCTCTTGAGATCCAAGCTTTGTTCTATTCCGCTCTACGGTCTTCTCGTG 1138
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 TCCACGGCCACCCTCTTGAGATCCAAGCTTTGTTCTATTCCGCTCTGCGGTCTTCTCGTG 1080
Query 1139 AGATGATAACTGTAAATGATAGCTCCAAAAATATAATAAAGACAATTAGCAACAGGCTCA 1198
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1081 AGATGATAACTGTAAATGACAGCTCCAAAAACATAATAAAGACAATCAGCAACAGACTCA 1140
Query 1199 GCGCATTATCATTTCACATCAGAGAAAACTATTGGGTTGACAAAAACAAAATCAATGAAA 1258
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1141 GCGCATTATCATTTCACATCAGAGAAAATTATTGGGTTGACAAAAACAAAATTAATGAAA 1200
Query 1259 TTTACCGTTACAAGACAGAGGAGTACTCTATGGACGCCACCAACAAGTTCAATATCTACC 1318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1201 TTTACCGTTACAAGACAGAGGAGTACTCCATGGACGCCACCAACAAGTTCAATATCTACC 1260
Query 1319 CGGAACAGGTTTCTCCATGGCTAATGGATTGGGTTCCTGAAAGTCCTGACTCTGGATTCC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1261 CGGAACAGGTTTCTCCATGGCTAATGGATTGGGTTCCTGAAAGTCCTGACTCGGGATTCC 1320
Query 1379 TGATAGGAAACCTCCAGCCTGCTCACATGGATTTCAGGTTCTTCACCTTGGGAAACCTCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGATAGGAAACCTCCAGCCTGCTCACATGGATTTCAGGTTCTTCACCTTGGGAAACCTCT 1380
Query 1439 GGTCAATCATCTCCTCACTAGGAACACCAAAACAGAACCAAGCTATATTAAATTTGGTTG 1498
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1381 GGTCAATCATCTCCTCACTAGGAACACCAAAACATAACCAAGCTATATTAAATTTGATTG 1440
Query 1499 AAGAGAAATGGGACGATCTCGTTGGGCATATGCCGCTTAAGATATGTTACCCGGCTTTAG 1558
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1441 AAGAGAAATGGGACGATCTTGTTGGTCATATGCCGCTTAAGATATGTTACCCGGCTTTGG 1500
Query 1559 AATCTTCAGAGTGGCATATAATAACCGGGAGTGACCCAAAGAACACGCCTTGGTCTTACC 1618
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1501 AATCTTCAGAGTGGCATATAATCACCGGGAGTGACCCAAAGAACACGCCTTGGTCTTACC 1560
Query 1619 ACAATGGTGGGTCATGGCCAACACTTCTCTGGCAATTCACACTAGCATGCATCAAGATGG 1678
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1561 ACAATGGCGGGTCATGGCCAACACTTCTCTGGCAATTCACACTGGCATGCATCAAGATGG 1620
Query 1679 GTAGACCAGAGTTAGCAGAGAAAGCAGTAACCTTGGCAGAGAAGAGGCTCCAAGCTGATC 1738
||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1621 ATAGACCAGAATTAGCAGAGAAAGCAGTTACCATGGCAGAGAAGAGGCTCCAAGCTGATC 1680
Query 1739 GATGGCCAGAGTACTACGATACAAGAGACGGGAAGTTCATTGGAAAACAGTCCAGGCTTT 1798
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGTGGCCAGAGTACTACGATACAAGAGACGGGAAGTTCATTGGAAAACAGTCCAGGCTTT 1740
Query 1799 ACCAGACATGGACAATTGCTGGTTTCTTAACTTCAAAACAGCTATTGCAGAATCCTGAAA 1858
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 1741 ACCAGACATGGACAATTGCTGGTTTCTTAACTTCAAAGCAATTGTTGCAGAATCCTGAAA 1800
Query 1859 TAGCATCATCCTTGTTCTGGGAAGAAGATCTTGAGCTTCTAGAGTCTTGCGTCTGCGTTC 1918
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1801 TAGCATCTTCCTTGTTCTGGGAAGAAGATCTTGAACTTCTAGAGTCTTGCGTGTGCGTTC 1860
Query 1919 TCACCAAATCAGGCCGGAAGAAATGTTCACGAGCCGCAGCAAAGTCTCAGATTCTTATAT 1978
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1861 TCACGAAATCAGGCCGGAAGAAATGTTCACGAGCTGCAGCAAAGTCTCAGATTCTTATCT 1920
Query 1979 AAATTG 1984
||||||
Sbjct 1921 AAATTG 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79303890090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5