BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05830.2
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523 857 0.0
> Ahg340760 jgi|Araly1|340760|fgenesh1_pg.C_scaffold_3000523
Length=1053
Score = 857 bits (464), Expect = 0.0
Identities = 535/570 (94%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 394 AGTTTATCAAAGAGTTGGAGGAATTTAGATTAAAGCTTGATACAACCAAGCAAACCGCAG 453
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct 317 AGTTTATCAAAGAGTTGGAGGAATTTAGATCAAAGCTTGATGCAACCAAGCAAATAGCAG 376
Query 454 AGGCAAGTGCTGATTCTGCTCAATCTACAAAGATCCAATGCTCAATGCTAAAGCAACAAC 513
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 377 AGGCAAGTGCTGATTCTGCTCAATCTACACAGATCCAATGCTCAATGCTAAAGAAACAAC 436
Query 514 TTGACGACAAAACACGTTCTCTCAGAGAACAAGAAGACCGTATGACTCAGCTTGGTCATC 573
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 437 TTGACGACAAAACACGTTCTCTCAGAGAACACGAAGACCGTGTGACTCAGCTCGGTCATC 496
Query 574 AGCTTGATGATCTACAGAGAGGTCTGAGCTTGAGAGAGTGCTCAGAAAAGCAGCTTAGAG 633
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 497 AGCTTGATGATCTACAGAGAGGTCTGAGCCTGAGAGAGTGCTCAGAAAAGCAGCTCAGAG 556
Query 634 AAGAAGTTAGGAGAATCGAGCGTGAGGTTACTGAGGCCATTGCAAAAGC-GGGAATAGGT 692
||||||||| |||||||||||| ||| | || ||| ||||| | ||||| ||| |||| |
Sbjct 557 AAGAAGTTAAGAGAATCGAGCGGGAGATAACAGAGTCCATTACGAAAGCTGGG-ATAGAT 615
Query 693 GGCATGGACAGCGAGCTCCAGAAACTTCTAGAAGATGTGTCTCCAATGAAATTTGAGAGG 752
||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 616 GGCATGGACTGCGAGCTGCAGAAACTTCTAGAAGATGTCTCTCCAATGAAATTTGAGAAG 675
Query 753 ATGAATAGGCTAGTTGAAGTAAAAGACGAAGAGATTACAAAACTGAAAGATGAGATAAGG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATGAATAGGCTAGTTGAAGTAAAAGACGAAGAGATTACAAAACTGAAAGATGAGATAAGG 735
Query 813 TTAATGTCAGGTCAATGGAAACATAAGACTAAGGAACTCGAATCTCAGCTGGAGAAACAG 872
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 736 TTAATGTCAGGTCACTGGAAACACAAGACTAAGGAACTCGAATCTCAGCTGGAAAAACAG 795
Query 873 AGAAGAACTGATCAAGATTTGAAGAAGAAGGTATTGAAGCTAGAGTTCTGTTTACAAGAA 932
|||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||
Sbjct 796 AGAAGAACTGATCAAGATCTGAAGAAGAAGGTACTGAAACTAGAGTTCTGTCTACAAGAA 855
Query 933 GCTCGAAGCCAGACAAGAAAGCTGCAGAGG 962
||| |||||||||| |||||||||||||||
Sbjct 856 GCTAGAAGCCAGACTAGAAAGCTGCAGAGG 885
Score = 436 bits (236), Expect = 1e-121
Identities = 267/282 (95%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 120 ATGTCTTATTCTGAAAAAACGACGGTGGATCCACTTCTGAGAGATTTGGATGAGAAGAAA 179
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGTCTTGTTCTGAAAAAACGACGGTGGATCCACTTCTAAGAGATTTAGATGAGAAGAAA 60
Query 180 GAGAGTTTCCGGCGAAACGTGGTGTCTCTGGCTACGGAGCTGAAGCAAGTGAGGGGCCGT 239
||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 61 GAGAGTTTCCGGCGAAACGTGGTGTCTTTGGCGGCGGAGCTGAAACAAGTGAGGGGCCGT 120
Query 240 TTGGTT-TCTCAAGAACAATCTTTTCTTAAAGAGACCATTACTAGAAAAGAAGCAGAGAA 298
|||||| | |||||||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 121 TTGGTTAT-TCAAGAACAATCCTTTCTTAAAGAAACCATAATTAGAAAAGAAGCAGAGAA 179
Query 299 AAGGGGAAAGAATATGGAAATGGAGATTTGTAAATTGCAGAAGAGACTGGAAGAAAGGAA 358
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 180 AAGGGGAAAGAATATGGAAATGGAGATGTGTAAATTGCAGAAGAGATTGGAAGAAAGGAA 239
Query 359 TTGTCAGCTTGAAGCTTCTGCATCTGCTGCTGATAAGTTTAT 400
||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGTCAGCTTGAAGCTTCTGCATCTGCTGCTGATAAGTTTAT 281
Score = 274 bits (148), Expect = 1e-72
Identities = 162/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1001 GAAAGGGGAAAGAAGGGACATGGAGATCAAAGAGATAAGAGATCTTATATCGGAGAAGCA 1060
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 885 GAAAGGGGAAAGAAGGGATATGGAGATCAAAGAGATAAGAGATCTGATATCGGAGAAACA 944
Query 1061 AAACCTTAACAATGAGTCTTGGGATAAACAGAAGTTCTGGGACAATTCAGGGTTCAAGAT 1120
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 ACAGCTTAACAATGAGTCTTGGGATAAACAGAAGTTCTGGGACAATTCAGGGTTCAAGAT 1004
Query 1121 TGTTGTATCAATGTCTATGTTGATGTTAGTGGTAGTCTCCAAGAGATGA 1169
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CGTTGTGTCAATGTCTATGTTGATGTTAGTGGTAGTCTCCAAGAGATGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5