BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05840.2
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477878 jgi|Araly1|477878|fgenesh2_kg.3__579__AT3G05840.1 2494 0.0
Ahg489503 jgi|Araly1|489503|fgenesh2_kg.6__2637__AT5G26751.1 1319 0.0
> Ahg477878 jgi|Araly1|477878|fgenesh2_kg.3__579__AT3G05840.1
Length=1693
Score = 2494 bits (1350), Expect = 0.0
Identities = 1580/1686 (94%), Gaps = 35/1686 (2%)
Strand=Plus/Plus
Query 1 ATCAGACCAACAACAAAAAGGAGATAAAGAGAAGAGGATTCATCATCATCAATCAATCCT 60
|||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||||
Sbjct 28 ATCAGACCAACAACAAAAAGGAGATAAAGAGAAGGGGA-T--TCATCATC-ATCAATCCT 83
Query 61 TCATTTTATGGATCTACTCATAtcttgattcttc-cttctatctctcccttttct-tcca 118
||| ||||||||||||||||||||||||||||| |||| |||||| |||||| |
Sbjct 84 TCA--TTATGGATCTACTCATATCTTGATTCTTCTCTTCCATCTCT-TTTTTTCTGGGC- 139
Query 119 tctctttttctctGGGTTTCCCCGATTTGAAGAGCGTGACAAAGGAAGAATC--TTTTAT 176
| || | || |||| |||||||||| ||||||||||||||||| |||| |
Sbjct 140 T-TCCCCGGGT-TGAGTTT-TTAGATTTGAAGA--GTGACAAAGGAAGAATCTGTTTTTT 194
Query 177 TAAAACAAATTCTTCTGTTT-TAATCTTGGGATGGCCTCGGTGGGCATAGAGCCTAGTGC 235
| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 195 TTTTACAAATTCTTCTGTTTGT-ATCTTGGGATGGCCTCGGTGGGCATAGAGCCTAGTGC 253
Query 236 CGCGGTTAGAGAATCTACTGGAAACGTTACTGATGCTGATAGATTACCCGAGGAGATGAA 295
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 254 CGCGGTTAGAGATTCTACTGGAAACGTTACTGATGTTGATAGATTACCTGAGGAGATGAA 313
Query 296 GGACATGAAAATTCAAGATGATAAAGAAATGGAAGCTACGATTGTTAATGGCAATGTGAC 355
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 314 GGACATGAAAATTCAAGATGATAAAGAAATGGAAGCTACAATTGTCAATGGCAATGTGAC 373
Query 356 TGAGACTGGCCATATAATAGTAACTACTATAGGAGGAAGAAATGGCCAGCCAAAACAGAC 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGAGACTGGCCATATTATAGTAACTACTATAGGAGGAAGAAATGGCCAGCCAAAACAGAC 433
Query 416 AATCAGTTACATGGCGGAGCGAGTTGTTGGACATGGCTCCTTTGGTGTTGTGTTTCAGGC 475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 434 AATCAGTTACATGGCGGAGCGAGTTGTTGGACACGGCTCCTTTGGTGTTGTGTTTCAGGC 493
Query 476 CAAATGTTTAGAAACAGGAGAAACTGTTGCTATAAAGAAAGTTCTACAAGATCGGAGGTA 535
|| || || ||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 494 GAAGTGCTTGGAAACTGGAGAAACTGTTGCGATAAAGAAAGTTCTGCAAGATCGGAGGTA 553
Query 536 CAAGAATCGTGAGCTTCAAACAATGAGGCTACTTGACCATCCAAATGTTGTGTCTTTGAA 595
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 554 CAAGAACCGTGAGCTTCAAACAATGAGGCTACTTGACCATCCGAATGTTGTGTCTTTGAA 613
Query 596 ACATTGTTTCTTCTCTACAACCGAAAAAGATGAGCTTTATCTCAACTTGGTTCTGGAATA 655
|||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 614 ACATTGCTTCTTCTCTACAACTGAAAAAGACGAGCTTTATCTTAACTTGGTCCTGGAATA 673
Query 656 CGTTCCGGAAACTGTGCACCGCGTCATCAAACACTACAACAAACTTAACCAACGAATGCC 715
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CGTTCCAGAAACTGTGCATCGCGTCATCAAACACTACAACAAACTTAACCAACGAATGCC 733
Query 716 TCTCGTTTACGTCAAACTTTACACTTATCAGATTTTTAGGTCCTTATCCTACATTCACCG 775
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 734 TCTCGTTTACGTCAAACTTTACACATATCAGATTTTTAGGTCCTTGTCCTACATTCACCG 793
Query 776 ATGTATCGGCGTATGTCATCGAGACATCAAACCTCAAAACTTGTTGGTAAATCCACACAC 835
||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 794 ATGTATCGGTGTGTGTCATCGTGACATAAAACCTCAAAACTTGTTGGTAAATCCACACAC 853
Query 836 TCATCAAGTGAAACTATGCGATTTTGGAAGTGCGAAAGTATTGGTTAAAGGAGAGCCAAA 895
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 854 TCATCAAGTGAAACTATGCGATTTTGGAAGTGCGAAAGTATTGGTAAAAGGAGAGCCAAA 913
Query 896 CATTTCATACATTTGCTCGAGGTATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGA 955
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CATTTCATATATTTGCTCAAGGTATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGA 973
Query 956 GTATACTACAGCCATTGATGTCTGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTTCTCGG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GTATACTACAGCCATTGATGTCTGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTTCTCGG 1033
Query 1016 GCAGCCATTGTTCCCGGGTGAGAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTT 1075
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GCAGCCATTGTTCCCTGGTGAGAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTT 1093
Query 1076 GGGAACACCAACAAGGGAAGAAATCAAATGCATGAACCCGAATTACACAGAGTTCAAATT 1135
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1094 GGGAACACCAACAAGAGAAGAAATCAAATGCATGAACCCAAATTACACAGAGTTCAAATT 1153
Query 1136 TCCTCAGATTAAAGCTCATCCATGGCATAAGATTTTCCACAAGAGAATGCCTCCAGAAGC 1195
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1154 TCCTCAGATAAAAGCTCATCCATGGCATAAGATATTCCACAAGAGAATGCCTCCAGAAGC 1213
Query 1196 TGTTGATTTGGTCTCAAGGCTTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGA 1255
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGTTGATTTAGTCTCAAGGCTTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGA 1273
Query 1256 TTCATTGGTCCACCCATTCTTTGACGAGCTAAGAGATCCGAATGCGCGATTACCCAACGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TTCATTGGTCCACCCATTCTTTGACGAGCTAAGAGATCCGAATGCGCGATTACCCAACGG 1333
Query 1316 ACGTTTCCTTCCACCGCTCTTTAACTTTAAGCCTCATGAACTTAAAGGTGTGCCTGTGGA 1375
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1334 ACGTTTCCTTCCACCGCTCTTCAACTTTAAGCCTCATGAGCTTAAAGGTGTGCCTGTGGA 1393
Query 1376 GATGGTGGCGAAGTTAGTTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTCAGTTTGTG 1435
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1394 GATGGTGGCTAAGTTAGTTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTTGGTTTGTG 1453
Query 1436 ATTTGTTCT-C----ACCTGCAAACACGAAAACTAGAGCAAAGCAGTC-GAGATATTCAt 1489
||||||||| | ||| ||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 1454 ATTTGTTCTGCTGTTACCCGCAAACACGGAAACTAGAGCAAAGCAGTCTGAGAAATTCAT 1513
Query 1490 ctcttctcttctctctccttctctGTATTAATATTATTAT-A--ATGATCATATCTCAA- 1545
||||||||| || || | |||||||||||||||||||||| | || ||||||||||||
Sbjct 1514 CTCTTCTCT-CT-TC-C-TTCTCTGTATTAATATTATTATTATTATTATCATATCTCAAA 1569
Query 1546 TCTGATGATTTAGTAACCCTTTGTTTGTTGTATGAGTAGAGAAAGAGTGAATCATTTGTG 1605
||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1570 TCTGAAGATTTAGTAATCCTTTGTTTGTTGTATGAGTAGAGA--GAGTGAATCATTTGTG 1627
Query 1606 GGGGTTATGATATTGTATAAGCCAACAAAGATTATTTTTTAAAGAGAGTTTCGTGTTTTC 1665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1628 GGGGTTATGATATTGTATAAGCCAACAAAGATTATTTTTTTAAGAGAGTTTGGTGTTTTC 1687
Query 1666 TGTCTC 1671
||||||
Sbjct 1688 TGTCTC 1693
> Ahg489503 jgi|Araly1|489503|fgenesh2_kg.6__2637__AT5G26751.1
Length=1523
Score = 1319 bits (714), Expect = 0.0
Identities = 1074/1247 (86%), Gaps = 28/1247 (2%)
Strand=Plus/Plus
Query 207 ATGGCCTCGGTGGGCATAGAGCCTAGTGCC-GCGGTTAGAGAATCTACTGGAAACGT--T 263
||||| || ||||| |||| |||| | || | || ||||| |||||| | || | |
Sbjct 120 ATGGCATCAGTGGGTATAGCTCCTAAT-CCTGGGGCAAGAGACTCTACT--ACACATACT 176
Query 264 ACTGATGCTGATAGATTACCCGAGGAGATGAAGGACATGAAAATTCAAGATGATAAAGAA 323
|||| || ||||| |||||| || || ||||| ||||||||||||| || |||||||||
Sbjct 177 ACTGGTGTTGATAAATTACCTGAAGAAATGAATGACATGAAAATTCGTGACGATAAAGAA 236
Query 324 ATGGAAGCTACGATTGTTA-ATGGCAATGTG-ACTGAGACTGGCCATATAATAGTAACTA 381
|||||||| || | || || |||| |||| | || |||||||| ||||| ||||| ||||
Sbjct 237 ATGGAAGCGAC-AGTGGTAGATGGAAATG-GAACAGAGACTGGACATATCATAGTGACTA 294
Query 382 CTATAGGAGGAAGAAATGGCCAGCCAAAACAGACAATCAGTTACATGGCGGAGCGAGTTG 441
|||| || |||||||||||||| |||||||||||||| || |||||||| || || ||||
Sbjct 295 CTATTGGTGGAAGAAATGGCCAACCAAAACAGACAATTAGCTACATGGCTGAACGTGTTG 354
Query 442 TTGGACATGGCTCCTTTGGTGTTGTGTTTCAGGCCAAATGT-TTAGAAACAGGAGAAACT 500
|||||||||| || |||||||||||||| || || | |||| || || || |||||||||
Sbjct 355 TTGGACATGGATCTTTTGGTGTTGTGTTCCAAGCGAGATGTCTT-GAGACGGGAGAAACT 413
Query 501 GTTGCTATAAAGAAAGTTCTACAAGATCGGAGGTACAAGAATCGTGAGCTTCAAACAATG 560
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 414 GTTGCGATAAAGAAAGTTTTACAAGATAGGAGGTACAAGAATCGTGAGCTTCAAACCATG 473
Query 561 AGGCTACTTGACCATCCAAATGTTGTGTCTTTGAAACATTGTTTCTTCTCTACAACCGAA 620
||||||||||||||||| |||||||||||||||||||| || ||||| || || || |||
Sbjct 474 AGGCTACTTGACCATCCTAATGTTGTGTCTTTGAAACACTGCTTCTTTTCAACCACTGAA 533
Query 621 AAAGATGAGCTTTATCTCAA-CTTGGTTCTGGAATACGTTCCGGAAACTGTGCACCGCGT 679
|||||||||||||| ||||| ||| ||||| |||||||| || ||||||||||| || ||
Sbjct 534 AAAGATGAGCTTTACCTCAATCTT-GTTCTTGAATACGTCCCAGAAACTGTGCATCGTGT 592
Query 680 CATCAAACACTACAACAAACTTAACCA-ACGAATGCCTCTCGTTTACGTCAAACTTTACA 738
||||||||||| |||||||| ||||| | ||||||||||| | |||||||| || ||||
Sbjct 593 TATCAAACACTATAACAAACTGAACCAGA-GAATGCCTCTCATATACGTCAAGCTATACA 651
Query 739 CTTATCAGATTTTTAGGTCCTTATCCTACATTCACCGATGTATCGGCGTATGTCATCGAG 798
||||||||||||||||| ||||||| ||||||||||||||||| || || ||||| || |
Sbjct 652 CTTATCAGATTTTTAGGGCCTTATCTTACATTCACCGATGTATTGGTGTGTGTCACCGTG 711
Query 799 ACATCAAA-CCTCAAAACTTGTTGGTAAATCCACACACTCATCAAGTGAAACTATGCGAT 857
|||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 712 ACAT-AAAGCCTCAAAACTTGTTGGTAAATCCGCACACTCATCAAGTAAAACTATGTGAT 770
Query 858 TTTGGAAGTGCGAAAGTATTGGTTAAAGGAGAGCCAAACATTTCATACATTTGCTCGAGG 917
||||||||||| ||||||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct 771 TTTGGAAGTGCAAAAGTATTGGTAAAAGGAGAACCAAACATCTCCTACATCTGCTCGAGG 830
Query 918 TATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGAGTATACTACAGCCATTGATGTC 977
||||||||||||||||| || ||||||||||| || |||||||| |||||||||||||||
Sbjct 831 TATTACAGAGCACCTGAACTTATTTTTGGAGCAACTGAGTATACAACAGCCATTGATGTC 890
Query 978 TGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTT-CTCGGGCAGCCATTGTTCCCGGGTGA 1036
|||||||| ||||||||||| || || | | || || || ||||| |||||||| |||||
Sbjct 891 TGGTCTGCGGGATGTGTTCTAGCTGAAC-TATTACTTGGACAGCCTTTGTTCCCTGGTGA 949
Query 1037 GAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTTGGGAACACCAACAAGGGAAGA 1096
|||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct 950 GAGCGGTGTTGATCAACTTGTAGAGATTATCAAGGTCTTGGGAACGCCTACTAGGGAAGA 1009
Query 1097 AATCAAATGCATGAACCCGAATTACACAGAGTTCAAATTTCCTCAGATTAAAGCTCATCC 1156
|||||| || |||||||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct 1010 AATCAAGTGTATGAACCCTAACTACACAGAATTCAAATTCCCTCAGATTAAAGCTCATCC 1069
Query 1157 ATGGCATAAGATTTTCCACAAGA-GAATGCCTCCAGAAGCTGTTGATTTGGTCTCAAGGC 1215
|||||| |||||||||||||| | | |||||||||||||||||||||||||||||||| |
Sbjct 1070 ATGGCACAAGATTTTCCACAA-ACGCATGCCTCCAGAAGCTGTTGATTTGGTCTCAAGAC 1128
Query 1216 TTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGATTCATTGGTCCACCCATTCT 1275
|||||||||||||||| ||||| || |||| ||||| || ||||||||||||||||||
Sbjct 1129 TTCTTCAATACTCTCCTAATCTACGAAGTGCCGCTCTCGACACATTGGTCCACCCATTCT 1188
Query 1276 TTGACGAGCTAAGAGATCCGAATGCGCGAT-TACCCAACGGACGTTTCCTTCCACCGCTC 1334
|||| ||||||||||| || || || || | |||| || ||||||||||||||||| ||
Sbjct 1189 TTGATGAGCTAAGAGACCCAAACGCACG-TCTACCTAATGGACGTTTCCTTCCACCACT- 1246
Query 1335 TTT-AACTTTAAGCCTCATGAACTTAAAGGTGTGCC-TGTGGAGATGGTGGCGAAGTTAG 1392
||| ||||| |||||||| || || |||||||| || | |||||||||| | |||||||
Sbjct 1247 TTTCAACTTCAAGCCTCACGAGCTGAAAGGTGTACCAT-TGGAGATGGTATCTAAGTTAG 1305
Query 1393 TTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTCAGTTTGTGATTT 1439
| || || ||||| |||||||| ||||| |||||| |||||||||||
Sbjct 1306 TACCTGAGCATGCAAGGAAGCAGTGTCCTTGGCTCGGTTTGTGATTT 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5