BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05858.1
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928195 jgi|Araly1|928195|scaffold_300652.1 477 3e-134
> Ahg928195 jgi|Araly1|928195|scaffold_300652.1
Length=314
Score = 477 bits (258), Expect = 3e-134
Identities = 288/302 (95%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 113 TAATTAACTAATGGGTGGTAAA-AATAGATCTCACAGTAGCAAGAGGTTCTCTCTCTTCA 171
||| ||| |||||||||| ||| || || |||||||||||||||||||||||||| ||||
Sbjct 12 TAAATAA-TAATGGGTGG-AAACAAAAGGTCTCACAGTAGCAAGAGGTTCTCTCTATTCA 69
Query 172 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGCAGACGGCTCATGGGACGACTTCG 231
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 70 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGTAGACGGCTCATGGGACGACGTCG 129
Query 232 GTTACACTCGCAAGGCAATGGCTAGTGATGAAGACAAACGTTATTGGGTCGCTGAACCAG 291
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 130 GTTACACTCGCAAGGCAATGGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAG 189
Query 292 GCATCGACCGTAAAGCGTCTGCCTTCATCGCCAAGTTTCATGCAACTCGTGTCTCTGAGT 351
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 190 GCATCGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGT 249
Query 352 CTGAGCGCCAGACTCTCTCTCCTTACCGATCCGAAAAGGCATGATGAATATGATGATCAA 411
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 250 CTGAGCGTCAGACTCTCTCTCCTTACCGATCCGACAAGGCATGATGAATATGATGATCAA 309
Query 412 GA 413
||
Sbjct 310 GA 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19306728034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5