BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05858.1 Length=530 Score E Sequences producing significant alignments: (Bits) Value Ahg928195 jgi|Araly1|928195|scaffold_300652.1 477 3e-134 > Ahg928195 jgi|Araly1|928195|scaffold_300652.1 Length=314 Score = 477 bits (258), Expect = 3e-134 Identities = 288/302 (95%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 113 TAATTAACTAATGGGTGGTAAA-AATAGATCTCACAGTAGCAAGAGGTTCTCTCTCTTCA 171 ||| ||| |||||||||| ||| || || |||||||||||||||||||||||||| |||| Sbjct 12 TAAATAA-TAATGGGTGG-AAACAAAAGGTCTCACAGTAGCAAGAGGTTCTCTCTATTCA 69 Query 172 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGCAGACGGCTCATGGGACGACTTCG 231 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 70 GCTTCTTCAAAACACGAAGATCTCACAGAGTGGAAGTAGACGGCTCATGGGACGACGTCG 129 Query 232 GTTACACTCGCAAGGCAATGGCTAGTGATGAAGACAAACGTTATTGGGTCGCTGAACCAG 291 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 130 GTTACACTCGCAAGGCAATGGCTAGTGATGAGGACAAACGTTATTGGGTCGCTGAACCAG 189 Query 292 GCATCGACCGTAAAGCGTCTGCCTTCATCGCCAAGTTTCATGCAACTCGTGTCTCTGAGT 351 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 190 GCATCGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTTCATGCGACTCGTGTCTCTGAGT 249 Query 352 CTGAGCGCCAGACTCTCTCTCCTTACCGATCCGAAAAGGCATGATGAATATGATGATCAA 411 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 250 CTGAGCGTCAGACTCTCTCTCCTTACCGATCCGACAAGGCATGATGAATATGATGATCAA 309 Query 412 GA 413 || Sbjct 310 GA 311 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19306728034 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5