BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05870.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330997 jgi|Araly1|330997|fgenesh1_pm.C_scaffold_8000340           466    8e-131
  Ahg928199 jgi|Araly1|928199|scaffold_300656.1                        368    2e-101


> Ahg330997 jgi|Araly1|330997|fgenesh1_pm.C_scaffold_8000340
Length=264

 Score =  466 bits (252),  Expect = 8e-131
 Identities = 260/264 (98%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  39   ATGAAAGTCAAGATCTTGCGTATCCTTTTATGGCATGCAGTTGCTTCATGGACATGGGAT  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAGTCAAGATCTTGCGTATCCTTTTATGGCATGCAGTTGCTTCATGGACATGGGAT  60

Query  99   GCTCAAGACGAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGC  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCTCAAGACGAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGC  120

Query  159  AAACTTCCTGGAGATGATTGCCCTCTAATTTGGGGAGCCTGCAACCACGCGTTTCATCTT  218
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  121  AAACTTCCTGGAGATGATTGCCCTCTAATTTGGGGAGCTTGCAATCACGCGTTTCATCTT  180

Query  219  CACTGTATATTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTGCAGA  278
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  181  CACTGTATATTGAAATGGGTGAATTCACAGACGAGTCAAGCTCATTGCCCAATGTGCAGA  240

Query  279  AGAGAATGGCAGTTCAAAGAGTAA  302
            ||||||||||||||||||||||||
Sbjct  241  AGAGAATGGCAGTTCAAAGAGTAA  264


> Ahg928199 jgi|Araly1|928199|scaffold_300656.1
Length=220

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 214/221 (97%), Gaps = 2/221 (1%)
 Strand=Plus/Plus

Query  108  GAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCT  167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCT  60

Query  168  GGAGATGATTGCCCTCTAATTTGGGGAGCCTGCAACCACGCGTTTCATCTTCACTGTATA  227
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  61   GGAGATGATTGCCCTCTAATTTGGGGAGCTTGCAATCACGCGTTTCATCTTCACTGTATA  120

Query  228  TTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTG-CAGAAGAGAATG  286
            ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||
Sbjct  121  TTGAAATGGGTGAATTCACAGACGAGTCAAGCTCATTGCCCAATGTGTC-GAAGAGAATG  179

Query  287  GCAGTTCAAAGAGTAAGCAAGTTATGAGGAGGATTAGTCTG  327
            |||||||||||||||||||||||||||||||||||| ||||
Sbjct  180  GCAGTTCAAAGAGTAAGCAAGTTATGAGGAGGATTATTCTG  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5