BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05880.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903443 jgi|Araly1|903443|Al_scaffold_0003_571                     278    3e-74


> Ahg903443 jgi|Araly1|903443|Al_scaffold_0003_571
Length=165

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 160/165 (97%), Gaps = 0/165 (0%)
 Strand=Plus/Plus

Query  47   ATGAGTACAGCTACTTTCGTTGATATTATTATCGCCATCCTCTTGCCTCCACTCGGTGTC  106
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTACAGCTACTTGCGTTGATATTATTATCGCCATCCTCTTGCCTCCACTCGGTGTC  60

Query  107  TTTCTCAGATTTGGTTGCGGGGTTGAGTTTTGGATATGTTTGGTTTTGACGCTACTTGGG  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   TTTCTCAGATTTGGTTGCGGGGTTGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGG  120

Query  167  TATATTCCTGGGATCATATACGCCATTTATGTCCTCACCAAATGA  211
            ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  121  TATATTCCTGGGATCTTATACGCCCTTTATGTCCTCACCAAATGA  165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5