BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05890.1

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317449 jgi|Araly1|317449|fgenesh1_pm.C_scaffold_3000465           283    5e-76


> Ahg317449 jgi|Araly1|317449|fgenesh1_pm.C_scaffold_3000465
Length=204

 Score =  283 bits (153),  Expect = 5e-76
 Identities = 159/162 (98%), Gaps = 0/162 (0%)
 Strand=Plus/Plus

Query  41   ATGAGTACAGCCACTTTCGTAGAGATTATTCTTGCTATCATCTTGCCTCCTCTCGGCGTC  100
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGAGTACAGCCACTTTCGTAGAGATTATTCTGGCTATCATCTTGCCTCCTCTCGGCGTC  60

Query  101  TTTCTCAAATTTGGTTGCAAGGTTGAGTTTTGGATATGTTTGATTTTGACGCTGTTTGGT  160
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  61   TTTCTCAAATTTGGTTGCAAGGTTGAGTTTTGGATATGTTTGATTCTGACGTTGTTTGGT  120

Query  161  TATCTTCCCGGAATCCTTTACGCTCTTTATATCATCACCAAG  202
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATCTTCCCGGAATCCTTTACGCTCTTTATATCATCACCAAG  162



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13049211438


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5