BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05910.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477888 jgi|Araly1|477888|fgenesh2_kg.3__589__AT3G05910.1 2606 0.0
> Ahg477888 jgi|Araly1|477888|fgenesh2_kg.3__589__AT3G05910.1
Length=1727
Score = 2606 bits (1411), Expect = 0.0
Identities = 1640/1742 (94%), Gaps = 49/1742 (3%)
Strand=Plus/Plus
Query 88 TAAATAAAACTCCAACCGTGAATCCAGCCATGAAACTCTTTTTAGAAAAT-CCTTTTTTA 146
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 TAAATAAAACTCCAACCGTGAATCCAGCCATGAAACT-TTTTTAGAAAATCCCTTTTTTT 59
Query 147 TAACAAATAATTCCTCTGcttcttcttcttcttcgtttatttcaccttttttggtttctt 206
||| ||| || | ||| ||||||| | ||| || | || || | ||
Sbjct 60 TAATAAA-AA------TAATTC--CTTCTTC-AC--TTA-TT---C-TTCTTCG----TT 98
Query 207 tAGCTCAGAAAAAGCCCATTCtttttttCTATTCTTGTTTATTTTAATCATACTGTGCGT 266
|||| ||| ||||||||||||||||||||| |||||| ||||||| ||| ||||| |||
Sbjct 99 TAGCCCAG-AAAAGCCCATTCTTTTTTTCT-TTCTTGAATATTTTATTCACACTGTTCGT 156
Query 267 TTCTACAAAGTTTGTTCCTTTCTTCTTCAACTCTCTCACTCACAGTCACAGAGATCTGTT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 TTCTACAAAGTTTGTTCCTTTCTTCTTCAACTCTCTCACTCACAGTCACAGAGATCTGTT 216
Query 327 --TCT-TTTC-tttttttGCTTTCACTCTTC-TCTTCCAGTGAGAGAGAGTGAGAGAAAA 381
||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 217 GATCTCTTTCTTTTTTTTGCTTTCACTCTTCACCTTCCAGT--GAGAGAGTGAGAGAAAA 274
Query 382 TGGTGAAGCTTTTGTTAGTAGGGTTTGTTGTGGCTGGTATAATACTGGGAACTCAAGCAA 441
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 275 TGGAGAAGCTTTTGTTAGTAGGGTTTGTTGTGGCTGGGATAATTCTGGGAACTCAAGCAA 334
Query 442 ATGAATATTTAGATTTCAATGTGACAGAAATAGATCGCATTGAGGAATTAGAGTTTGGAT 501
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 335 ATGAATATTTAGATTTCAATCTGACAGAAATAGATCGCATTGAGGAATTAGAGTTTGGAT 394
Query 502 TTTCCAAATATAGCTCCAATTTGAACCCTTTAATGGTTGGTCTCACCCTTATCAGAGGAG 561
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 TCTCCAAATATAGCTCCAATTTAAACCCTTTAATGGTTGGTCTCACCCTTATCAGAGGAG 454
Query 562 CTGATTCTGGAGCTGTTTGTTTGGATGGAACATTGCCTGGATATCACTTGCACCGTGGAC 621
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 455 CTGATTCTGGAGCTGTTTGTTTGGATGGAACATTGCCCGGATATCACTTGCACCGTGGAC 514
Query 622 ATGGATCTGGAGCTAATAGCTGGCTCATTCAATTGGAGGGAGGAGGATGGTGCAACAACA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATGGATCTGGAGCTAATAGCTGGCTCATTCAATTGGAGGGAGGAGGATGGTGCAACAACA 574
Query 682 TCAGGACCTGTGTATACAGGAAGACTACTCGACGTGGTTCCTCTAATTATATGGAGAAAC 741
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 575 TCAGGACCTGTGTATACCGGAAGACGACTCGACGTGGTTCCTCTAATTATATGGAGAAAC 634
Query 742 AGCTTCAGTTTACAGGAATACTGAGTGACAAAGCTCAAGAAAATCCTGACTTTTTCAACT 801
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 635 AGCTTCAGTTTACAGGAATACTGAGTGACAAAGCTCAAGAAAATCCTGACTTCTTCAACT 694
Query 802 GGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATC 861
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 695 GGAATAGAGTTAAGCTTCGTTACTGTGATGGTGCTTCTTTCAGTGGAGATGGCCAGAATC 754
Query 862 AGGCTGCACAACTTCAGTTTAGAGGAGAGCGTATCTGGAGAGCCGCAATAGATGATTTGA 921
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 755 AGGCTGCACAGCTTCAGTTTAGAGGAGAGCGCATCTGGAGAGCGGCAATAGATGATTTGA 814
Query 922 AGGCGAATGGAATGCGATACGCCAATCAGGCACTTCTCTCCGGATGCTCTGCTGGTGGTT 981
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 815 AGGCGAATGGAATGCGATATGCCAACCAGGCACTTCTCTCTGGATGCTCTGCTGGTGGTT 874
Query 982 TAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTATTCCCTGGATCAACCAAAGTCA 1041
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 875 TAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTGTTCCCTGGATCAACCAAAGTCA 934
Query 1042 AGTGCTTGAGTGATGCAGGCTTGTTCTTGGACACTGCCGATGTTTCAGGCGGCCGCACAA 1101
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 935 AGTGCTTGAGTGATGCAGGCTTGTTCTTGGACACAGCCGATGTTTCAGGCGGCCGCACAA 994
Query 1102 TCAGGAACTTATACAATGGTGTCGTAGAATTGCAGAGTGTGAAGAACAATCTTCCACGTA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TCAGGAACTTATACAATGGTGTCGTAGAATTGCAGAGTGTGAAGAACAATCTTCCACGTA 1054
Query 1162 TATGCACAAACCATCTTGATCCAACCTCGTGTTTCTTCCCACAAAATCTGATCAGTCAAA 1221
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1055 TATGCACAAACCATCTCGATCCAACCTCGTGTTTCTTCCCACAAAATCTGATCAGTCAGA 1114
Query 1222 TGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGATTCAAAGCAGTA 1281
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1115 TGAAAACTCCACTTTTTATCGTCAACGCAGCATACGATACATGGCAGATTCAAAGCAGTA 1174
Query 1282 TAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCATGACTGCAGACTAAACCATGGAA 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1175 TAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCATGACTGCAGACTAAACCATGGCA 1234
Query 1342 AATGTACTCCTGCACAGTTGAGATTCTTGCAAGGATTCAGGGAACAGATGCTTAGAGTAG 1401
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1235 AATGTACTCCTGCACAATTGAGATTCTTGCAAGGATTCAGGGATCAGATGCTTAGAGTAG 1294
Query 1402 TCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACT 1461
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TCAGGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACT 1354
Query 1462 GCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGG 1521
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1355 GCCAAACCGAGAGGCAAGATACTTGGTTTGCCGATGATTCTCCTGTCATCAGGAAAAAGG 1414
Query 1522 CGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAGTTAGTCGATT 1581
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CCGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAGTTAGTCGATT 1474
Query 1582 GCCCATACCCGTGTGACAAGAGCTGCCACAACTTGGTGTTCAGATGATTGTTTGACTATG 1641
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1475 GCCCTTACCCGTGTGACAAGAGCTGCCACAACTTGGTGTTCAGATGATTCATTGATTATG 1534
Query 1642 TT-CTTTATTCTCTCTCATATATACATACCTTAGAAAATTTCTTTCTTTCAAAAGGAAAG 1700
|| |||| ||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1535 TTTCTTTCTTCTCTC--ATATATACATACCTT------T--CTTTCTTTCAAAAGGAAAG 1584
Query 1701 ATTTTGTATCCTTTGGTAGTAACCAATGCCTCATTGGTATAT--GATTAAGTGTATCGTG 1758
||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1585 ATTTTGTATCCTT-GGTAGTAACCAATGCCTCATTGGTATATATGATTAAGCGTATCCTG 1643
Query 1759 GAAAATCATAATaaaaaaacaaaacaaaacaaaGTTTGCTTAAAAAGAGTTCAA-TGTAA 1817
||||| ||||||||||||| ||||| || ||||||||||||||||||||||||| |||||
Sbjct 1644 GAAAACCATAATAAAAAAA-AAAACCAA-CAAAGTTTGCTTAAAAAGAGTTCAAATGTAA 1701
Query 1818 TC 1819
||
Sbjct 1702 TC 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5