BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05920.1
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477889 jgi|Araly1|477889|fgenesh2_kg.3__590__AT3G05920.1 815 0.0
> Ahg477889 jgi|Araly1|477889|fgenesh2_kg.3__590__AT3G05920.1
Length=616
Score = 815 bits (441), Expect = 0.0
Identities = 583/646 (90%), Gaps = 32/646 (5%)
Strand=Plus/Plus
Query 1 AATAACTTCTTCTCTTCCTTCTTCATTCCTTTAATCCATTTTTCTCGATCTTGGCTAATC 60
||||||||| ||||| |||||||||||||| ||||||| | | || | || |||
Sbjct 1 AATAACTTCATCTCTGCCTTCTTCATTCCTCTAATCCA----T-T---TC-T--CT-ATC 48
Query 61 CATCATGACTGTCAAGAAAGTTGAGATCAAGGTGGATATAAACTGTGGAAAATGCAACAG 120
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 49 CATCATGACTGTCAAGAAAGTTGAAATCAAGGTAGATATAAACTGCGGAAAATGCAACAG 108
Query 121 CGCAATCATGGAAGCAGTCACAGAGATAGAAGGTGTGAATCATATTTCATTAGATGAAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 109 CGCAATCATGGAAGCAGTCACAGAGATAGAAGGTGTGAATCATATTTCATTAGATGATGG 168
Query 181 AAATAGTATACTTACCGTGGTGGGGACAATGGATCCGGTCTGCGTAGCAACAAGGCTGAA 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 169 GAATAGTATACTCACCGTGGTGGGGACAATGGATCCGGTCTGCGTTGCAACAAGACTGAA 228
Query 241 AAAGATTAAACAGAAACCTGTGATCATTAGCGTTGGACCACCACCAAAACCTCCTGAGCC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 229 GAAGATTAAACAGAAACCTGTAATCATTAGCGTTGGACCACCACCAAAACCTCCTGAGCC 288
Query 301 ACCAAAGCCTCCAGAGCCTGAAAAACCAAAGCCTCCACCAGCACCTGAACCACCAAAGCA 360
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 289 ACCAAAGCCTCCAGAGCCTGAGAAACCAAAGCCTCCACCAACACCTGAACCACCAAAGCA 348
Query 361 TGTATGCAAGCCACCTTACTGCAACAGTTGTGATGTTGTGTCTGTTACTACCTATGAAAG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 349 CGTATGCAAGCCACCTTACTGCAACAGTTGTGATGTTGTGTCTGTTACTACATATGAAAG 408
Query 421 TGGAAGCGGCTGCACCATTCTTTGAGTCATATATCGCGTACCATAGCCTTCATGTTAAGT 480
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 409 TGGAAGCGGCTGCACCATTCTTTGAGTCCTGTATCTTGTACCATAGCCTTCATGTTAAG- 467
Query 481 CCTGTATTTAGCCAATACTAATTCATCATGTTCTCATGCttttttgtttatttctttttC 540
||| ||||||||||||||||||| ||||||||||||| ||||||| ||| |
Sbjct 468 CCTATATTTAGCCAATACTAATTTATCATGTTCTCATCCTTTTTT-TTT-T--------- 516
Query 541 TCAAATATGAATCTCTGTTGTTTGTCCCTCCCCTGTTTAT-AATTAGTCGCTTCTTTGAC 599
||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||
Sbjct 517 --AAATAAGAATCTCGGTTGTTTGTCCCTCACCTGTTT-TCAATTAGTCGCTTGTTTGAC 573
Query 600 ACAAGAAGTCTCATGAGTT-CATGCTAAAGAAAATAAAAGTTCAAA 644
||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 574 ACAAG---TCGCATGAGTTTCATGCTAAAGAAAAGGAAAGTTCAAA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23674331457
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5