BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05935.1

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928206 jgi|Araly1|928206|scaffold_300663.1                        165    4e-40


> Ahg928206 jgi|Araly1|928206|scaffold_300663.1
Length=403

 Score =  165 bits (89),  Expect = 4e-40
 Identities = 95/98 (97%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  284  CCTGACCCTGAAGATGACAACTTTAAGCTTAGGGTTCTGCTACAGACCAATGATTTCTTC  343
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  291  CCTGACCCTGAAGATGTCAACTTTACGCTTAGGGTTCTGCTACAGACCAATGATTTCTTC  350

Query  344  TCCAAGGATTCTAATCCACATCTCTGTTTGTAAGTTCA  381
            |||||||| |||||||||||||||||||||||||||||
Sbjct  351  TCCAAGGACTCTAATCCACATCTCTGTTTGTAAGTTCA  388


 Score =  130 bits (70),  Expect = 1e-29
 Identities = 167/210 (80%), Gaps = 22/210 (10%)
 Strand=Plus/Plus

Query  93   ACAATGAACAGAACGAGAGAGATCCTGAT-A-A-CATCAACAACAAGAAGAAGAAAAAGG  149
            |||||||||| ||||||||||||  |||| | | ||| || || ||||||||||||||||
Sbjct  61   ACAATGAACATAACGAGAGAGATAATGATAACACCATTAAGAAGAAGAAGAAGAAAAAGG  120

Query  150  AATCTCCATTG--TTGA-T-TT-A---C-TCCGTCTCGAAAGCAAAGAAACGAATCGTGT  200
            || ||  |  |  | || | || |   | | |||||| ||||| ||||||| |||||| |
Sbjct  121  AAGCTAAAGGGAATCGATTCTTGATCCCTTTCGTCTCAAAAGCTAAGAAACAAATCGTAT  180

Query  201  CTAAGTTCAGAAGGAGACCCTTATCGCCGAATACGTCTCCTTCTTCTGGGTTTTGGAAAA  260
            ||||| ||| ||||| ||||||||||||   |  |    |||||||||||||||||||||
Sbjct  181  CTAAGATCACAAGGAAACCCTTATCGCC---T--G----CTTCTTCTGGGTTTTGGAAAA  231

Query  261  GAGTCTGCTTTTGTGGAATTGAACCTGACC  290
            |||||||||||||||||| ||||||| |||
Sbjct  232  GAGTCTGCTTTTGTGGAACTGAACCT-ACC  260



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23369348121


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5