BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05936.1

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928207 jgi|Araly1|928207|scaffold_300664.1                        532    1e-150


> Ahg928207 jgi|Araly1|928207|scaffold_300664.1
Length=388

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 354/385 (92%), Gaps = 8/385 (2%)
 Strand=Plus/Plus

Query  170  CTTTATAAGAAACAGAGATGTTGCAGATTGTAGGCAAGTACCGGTGGAGACAATCTTATC  229
            ||||| |||| || |||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct  4    CTTTAAAAGAGACCGAGATGTTGCAGGTTGTAGGCAAGTACCGTTGGAGACAATCATATC  63

Query  230  GGTACAAGAAGCTAACTGATCATGGCGAGAGATTGACAACACCACCA-CCA-G---A-AA  283
            ||||||||||||||||||||||    |||| |||||||||| ||||| ||| |   | ||
Sbjct  64   GGTACAAGAAGCTAACTGATCAACATGAGAAATTGACAACAACACCACCCACGACAACAA  123

Query  284  GAACAACGAGGTCGCCGACCAAAAGACAGAACTTGGGGAAGAAGAACGAGAC-TCGAGCA  342
             ||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct  124  CAACAACGAGGTCGTCGGCCAAAAGACAGAACTTGGGGAAGAAGAACGAG-CTTCGAGCA  182

Query  343  AAAGGGTTCAGAGTAAATCGATCAAGGAAGCTGGTTCTTAAGGCACTAGCTTTGCCAAGA  402
            |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | |
Sbjct  183  AAAGGGTTCAGAGTAAATCGGTCAAGGAAGCTGGTCCTTAAGGCATTAGCTTTGCCCACA  242

Query  403  AGGATCTTTAACATTTATATGCGCATCACAAATCAGATGAACAAAGAAGGTTTATATCCT  462
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  AGGATCTTAAACATTTATATGCGCATCACAAATCAGATGAACAAAGAAGGTTTATATCCT  302

Query  463  AATCTTGTTTTCTCTTCTCATTGGGGTTTCCCTGGTTTGCTGAATTCAAGAGGTGGATTC  522
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  303  AATCTTGTTTTCTCTTCTCATTGGGGTTTCCCTGGTCTGCTGAATTCAAGAGGTGGATTC  362

Query  523  CGTTAGTGAGAAGATATCTGATTCT  547
            ||||||||||||||||||| |||||
Sbjct  363  CGTTAGTGAGAAGATATCTTATTCT  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27944098161


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5