BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G05937.1

Length=874
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928208 jgi|Araly1|928208|scaffold_300665.1                        486    9e-137


> Ahg928208 jgi|Araly1|928208|scaffold_300665.1
Length=348

 Score =  486 bits (263),  Expect = 9e-137
 Identities = 308/329 (94%), Gaps = 5/329 (2%)
 Strand=Plus/Plus

Query  313  AGCAGCAACGGCGTTTGGCAGAGCAATAGTAACGGTTACTATAGCTATGGATATGGAGGA  372
            |||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||||
Sbjct  24   AGCAGCAACGGCGTTTGGCAGAGC-A-A-CAACGGTTACCATAGCTATGGATATGGAGGA  80

Query  373  GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCGAGGAAACAGAGT  432
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  81   GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCAAGGAAACAGAGT  140

Query  433  TTCACAGAGAAGATTAAGATATCCATGAAGAGAGTGGTGAAGAAAGTTGTTTGTATGAGG  492
            || ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct  141  TTAACAGAGAAGATCAAGATATCCGTGAAGAGAGTGGCGAAGAAAGTTGTTTGGATGAGG  200

Query  493  TTGAAATCTGCTAGAAGATTGAAACGCGTCGTTTGGTCGCGGCTGAAAACGGCGTTTTTC  552
            |||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct  201  TTGAAATCTGCTAGAAGACTGAAACGCGTCGTTTGGTCACGTCTCAAAACGGCGTTTTTC  260

Query  553  TACCGCCGTAGACGTTTCCTTCGTCTCCTTCATCCAAACAAATCctcttcctactgtttc  612
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  261  TACCGCCGTAGACGTTTCTTTCGTCTCCTTCATCCAAACAAACCCTCTTCCTACTGTTTC  320

Query  613  tactagg-tttctcttttctcttcttgtc  640
            ||||||| |||||||||   |||||||||
Sbjct  321  TACTAGGGTTTCTCTTTGA-CTTCTTGTC  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32366356533


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5