BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05937.1 Length=874 Score E Sequences producing significant alignments: (Bits) Value Ahg928208 jgi|Araly1|928208|scaffold_300665.1 486 9e-137 > Ahg928208 jgi|Araly1|928208|scaffold_300665.1 Length=348 Score = 486 bits (263), Expect = 9e-137 Identities = 308/329 (94%), Gaps = 5/329 (2%) Strand=Plus/Plus Query 313 AGCAGCAACGGCGTTTGGCAGAGCAATAGTAACGGTTACTATAGCTATGGATATGGAGGA 372 |||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||| Sbjct 24 AGCAGCAACGGCGTTTGGCAGAGC-A-A-CAACGGTTACCATAGCTATGGATATGGAGGA 80 Query 373 GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCGAGGAAACAGAGT 432 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 81 GGATACGTGGAGAAGAGACAACTATTCCTTAAGAGCTACCAATTCTCAAGGAAACAGAGT 140 Query 433 TTCACAGAGAAGATTAAGATATCCATGAAGAGAGTGGTGAAGAAAGTTGTTTGTATGAGG 492 || ||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||| Sbjct 141 TTAACAGAGAAGATCAAGATATCCGTGAAGAGAGTGGCGAAGAAAGTTGTTTGGATGAGG 200 Query 493 TTGAAATCTGCTAGAAGATTGAAACGCGTCGTTTGGTCGCGGCTGAAAACGGCGTTTTTC 552 |||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||| Sbjct 201 TTGAAATCTGCTAGAAGACTGAAACGCGTCGTTTGGTCACGTCTCAAAACGGCGTTTTTC 260 Query 553 TACCGCCGTAGACGTTTCCTTCGTCTCCTTCATCCAAACAAATCctcttcctactgtttc 612 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 261 TACCGCCGTAGACGTTTCTTTCGTCTCCTTCATCCAAACAAACCCTCTTCCTACTGTTTC 320 Query 613 tactagg-tttctcttttctcttcttgtc 640 ||||||| ||||||||| ||||||||| Sbjct 321 TACTAGGGTTTCTCTTTGA-CTTCTTGTC 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32366356533 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5