BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05940.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340770 jgi|Araly1|340770|fgenesh1_pg.C_scaffold_3000533 2058 0.0
Ahg489487 jgi|Araly1|489487|fgenesh2_kg.6__2621__AT5G26740.1 1277 0.0
> Ahg340770 jgi|Araly1|340770|fgenesh1_pg.C_scaffold_3000533
Length=1260
Score = 2058 bits (1114), Expect = 0.0
Identities = 1219/1269 (96%), Gaps = 9/1269 (1%)
Strand=Plus/Plus
Query 362 ATGGCGGATTTGTTACCCATTTACCTCATTATTTTGGCATTTCTATGCACTGTCGGAGCC 421
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGCGGATTTGCTACCCATTTACCTCATTATCGTAGCATTTCTATGCACTGTCGGAGCC 60
Query 422 ATTGCTTTGGCTTTATTCCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTAT 481
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGCTTTGGCTTTGTTTCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTAT 120
Query 482 CAGAGATATATTGTGCGCATTGTCTTCATGGTCCCGGTTTATGCCTTGATGTCATTCTTG 541
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CAGAGATATATTGTGCGCATCGTCTTCATGGTCCCGGTCTATGCCTTGATGTCATTCTTG 180
Query 542 GCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTACGAAGCA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTATGAAGCA 240
Query 602 TGGGTGATATATAATTTTCTATCGCTGTGTTTGGCCTGGGTTGGAGGCCCAGGTTCGGTA 661
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 TGGGTGATTTATAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGTTCAGTA 300
Query 662 GTTATAAGTTTAACTGGTCGCTCTCTGAAGCCATCTTGGCATCTCATGACGTGTTGCATC 721
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||
Sbjct 301 GTTATAAGTTTAACTGGTCGATCTCTGAAGCCATCGTGGCATCTCATGACATGTTGCTTC 360
Query 722 CCACCACTACCATTAGACGGGCGTTTTATTAGACGATGCAAGCAAGGTTGTCTGCAATTT 781
|| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 361 CCTCCACTACCATTAGACGGGCGTTTTATTCGACGGTGCAAGCAAGGTTGTTTGCAATTT 420
Query 782 GTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAATAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAATAC 480
Query 842 AAGGATGGAAATTTTAGCCCTGATCAATCCTATCTCTATCTTACCATCATCTATACAATA 901
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGATGGAAATTTCAGCCCTGACCAATCCTATCTCTATCTTACCATCATCTATACAATA 540
Query 902 TCATACACTGTAGCTCTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGCTT 961
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCATACACAGTAGCTTTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGCTT 600
Query 962 CAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTTGTCTTTCTAACCTAT 1021
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTCGTCTTTCTAACCTAT 660
Query 1022 TGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGATGAAGAAGAA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGATGAAGAAGAA 720
Query 1082 GCAGCCCTCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGCTGCTCAT 1141
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGCGCTCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGCTGCTCAT 780
Query 1142 TTCTATGCATTTCCGTACAAGGAATATGCAGAGGCCAATGTTGGAGGAGCTCGCAGTTTC 1201
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 TTCTATGCATTTCCGTACAAGGAATATGCAGAGGCCAATGTGGGAGGAGCTCGCAGTTTC 840
Query 1202 TCAGGAAGTCTGGCACATGCTCTTATGCTAAACGATTTCTACCATGATACTGTTCACCAG 1261
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 TCAGGAAGTCTGGCACATGCTCTTATGCTAAATGATTTCTACCATGATACTGTTCACCAG 900
Query 1262 TTTGCACCAACATATCACGATTATGTGCTCTATAATCATAATGATGGGGGTGAGGAAGGG 1321
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 TTTGCCCCAACATATCACGATTATGTGCTCTATAATCATAATGATGGTGGTGAGGAAGGG 960
Query 1322 ACAAGGAAGTACCGAGCACGAACATTTGTGCCAACTGGTCAGGAAATGGATGCTGTTAGA 1381
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 ACAAGGAAGTACCGAGCAAGAACATTTGTGCCAACTGGTCAGGAAATGGATGCTGTCAGA 1020
Query 1382 AAGAACAAACACATGTTTGGAAACAAGATAGATGGTGTTTCGGTCTCCAGTCAATCTTCA 1441
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 AAGAACAAGCACATGTTTGGAAACAAGATAGATGGTGTTTCGGTCTCTAGTCAATCTTCA 1080
Query 1442 GAAACAAGCACACCCAAAACCTCTGGTGTAACTTATGATCCTGCACGCCCTGAGAGCATG 1501
|||||||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct 1081 GAAACAAGCACACCCAAAACCTCTGGTG-A--T------CCTTCACGCCCTGAGAGCATG 1131
Query 1502 AAATCTTCCTTGCTGGTAGATGCCTCGGACTCTGTTTCCACAATGTATGACATGTCGCTC 1561
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1132 AAATCTTCCTTGCTGGTAGATGCCTCAGACTCGGTTTCCACAATGTATGACATGTCGCTA 1191
Query 1562 ATTGACATTGATATATCGAGCTACCCTAGCAAGGTACCTTCTGCAAATATAAGTGGAGGA 1621
|||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1192 ATTGACATCGATATATCGAGCTACCCAAGCAAGGTACCTTTTGCAAATATAAGTGGAGGA 1251
Query 1622 CCTAAATAG 1630
|||||||||
Sbjct 1252 CCTAAATAG 1260
> Ahg489487 jgi|Araly1|489487|fgenesh2_kg.6__2621__AT5G26740.1
Length=1703
Score = 1277 bits (691), Expect = 0.0
Identities = 1136/1348 (84%), Gaps = 41/1348 (3%)
Strand=Plus/Plus
Query 345 CTTAGCTC-TTGTACAGAATGGCGGATTTGTTACCCA-TTTACCTCATTATTTTGGCATT 402
|||||||| || | ||||||||||||||| || ||| |||| || | |||| |||| ||
Sbjct 217 CTTAGCTCTTTCTTGAGAATGGCGGATTTGATA-CCATTTTATCTGAATATTGTGGCGTT 275
Query 403 TCTATGCACTGTCGGAGCCATTGCTTTGGCTTTATTCCATATCTACAAGCACCTATTGAA 462
|||||| ||||| ||||| |||||||||||| |||| |||||||||| ||| || |||||
Sbjct 276 TCTATGTACTGTTGGAGCTATTGCTTTGGCTATATTTCATATCTACAGGCATCTTTTGAA 335
Query 463 CTATACGGAACCCATTTATCAGAGATATATTGTGCGCATTGTCTTCATGGTCCCGGTTTA 522
|| |||||||| | |||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 336 TTACACGGAACCAACTTATCAGAGATATATTGTACGCATTATCTTTATGGTTCCGGTTTA 395
Query 523 TGCCTTGATGTCATTCTTGGCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTAT 582
|||||| |||||||||||| |||| || || || || ||||| ||||||||| | || ||
Sbjct 396 TGCCTTCATGTCATTCTTGTCTCTTGTGTTACCGAAAAGCTCGATATATTTTGATTCCAT 455
Query 583 CCGTGAAGTTTACGAAGCATGGGTGATATATAATTTTCTATCGCTGTGTTTGGCCTGGGT 642
|| ||||| || ||||||||||| || || ||||| ||||||||||||||||| |||||
Sbjct 456 ACGAGAAGTATATGAAGCATGGGTTATTTACAATTTCCTATCGCTGTGTTTGGCATGGGT 515
Query 643 TGGAGGCCCAGGTTCGGTAGTTATAAGTTTAACTGGTCGCTCTCTGAAGCCATCTTGG-C 701
|||||||||||| || ||||| | ||||| | |||||||||||| |||||||| ||| |
Sbjct 516 TGGAGGCCCAGGATCAGTAGTGCTTAGTTTGAGTGGTCGCTCTCTAAAGCCATCATGGTC 575
Query 702 ATCTCATGACGTGTTGCATCCCACCACTACCATTAGACGGGCGTTTTATTAGACGATGCA 761
||||||||| |||||| | || || || |||| |||||||||||||||||||||||||
Sbjct 576 -TCTCATGACATGTTGCTTTCCGCCTTTAACATTGGACGGGCGTTTTATTAGACGATGCA 634
Query 762 AGCAAGGTTGTCTGCAATTTGTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGC 821
|||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||
Sbjct 635 AGCAAGGTTGTCTGCAGTTTGTTATCCTGAAGCCTATTCTAGTTGCTGTCACACTTGTGC 694
Query 822 TTTATGCAAAAGGGAAATACAAGGATGGAAATTTTAGCCCTGATCAATCCTATCTCTATC 881
||||||| |||||||| ||||||||||| ||||||| |||||||||| | ||||||||||
Sbjct 695 TTTATGCTAAAGGGAAGTACAAGGATGGGAATTTTAACCCTGATCAAGCATATCTCTATC 754
Query 882 TTACCATCATCTATACAATATCATACACTGTAGCTCTGTACGCGCTGGTCCTCTTTTATG 941
|||||||||||||||| ||||| ||||| || ||| |||| || || || || ||||||
Sbjct 755 TTACCATCATCTATACCATATCCTACACAGTGGCTTTGTATGCACTTGTGCTGTTTTATA 814
Query 942 TGGCATGCAAAGATCTGCTTCAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGT 1001
||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 815 TGGCATGCAGAGATCTACTTCAGCCATTCAATCCAGTACCAAAGTTTGTGATTATAAAGT 874
Query 1002 CTGTTGTCTTTCTAACCTATTGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGAT 1061
|||| |||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 875 CTGTGGTCTTTCTCACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGAT 934
Query 1062 TTATAAGG-GATGAAGAAGAAGCAGCCC-TCTTCCAAAATTTTATAATATGTGTGGAAAT 1119
| |||| | | || ||| | |||||| | | ||||||||||||||||||||||| || ||
Sbjct 935 TCATAAAGAG-TGCAGAGGCAGCAGCTCAT-TTCCAAAATTTTATAATATGTGTCGAGAT 992
Query 1120 GCTTATTGCTGCAGC-TGCTCATTTCTATGCATTTCCGTACAAGGAATATGCAGAG-GCC 1177
||||||||||||||| ||| ||||||||||| ||||| |||||||| ||||| | | |||
Sbjct 993 GCTTATTGCTGCAGCATGC-CATTTCTATGCTTTTCCATACAAGGAGTATGCTG-GTGCC 1050
Query 1178 AATGTTGGAGGAGCTCGCAGTTTCTCAGGAAGTCTGGCACATGCTCTTATGCTAAACGA- 1236
|||||||| ||| || ||||||||||||| || || |||||||| | | ||||| ||
Sbjct 1051 AATGTTGGTGGATCTGGCAGTTTCTCAGGGAGCCTATCACATGCTGTAAAACTAAATGAC 1110
Query 1237 TTTCTACCATGATACTGTTCACCAGTTTGCACCAACATATCACGATTATGTGCTCTATAA 1296
||| |||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1111 TTT-TACCATGACACTGTTCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAA 1169
Query 1297 TCAT-AATGATGGGGGTGAGGAAGGGA-CAAGGAAGTACCGAG-C-ACGAACATTTGTGC 1352
||| || ||||| ||||| || |||| ||| ||||||||| | | | |||| |||||||
Sbjct 1170 CCATCAA-GATGGTGGTGACGA-GGGAACAAAGAAGTACCG-GTCGA-GAACTTTTGTGC 1225
Query 1353 CAACTGGTCAGGAAATGGATGCTGTTAGAAAGAACAAACACATGTTTGGAAACAAGATAG 1412
|||| || || ||||||||||| | ||||||||||||| | ||| || |||||||||||
Sbjct 1226 CAACAGGCCAAGAAATGGATGCAATGAGAAAGAACAAACCCGTGTATGCAAACAAGATAG 1285
Query 1413 ATGGTGTTTCGGTCTCCAGT---CAATCTTCAGAAACAAGCACACCCAAAACCTCTGGTG 1469
||||||||||||| || ||| | ||||||||| ||||| |||| |||| |||| | |
Sbjct 1286 ATGGTGTTTCGGTTTCAAGTAGTCTATCTTCAGAGGCAAGCTCACCAAAAAGCTCTAGCG 1345
Query 1470 TAACTTATGATCCTGCACGCCCTGAGAGCA-TGAAATCTTCCTTGCTGGTAGATGCCTCG 1528
|||||| ||||||||||||| |||| || |||||||||| ||||| || |||||||||
Sbjct 1346 TAACTTCTGATCCTGCACGCTCTGAT-GCTGTGAAATCTTCATTGCTCGTGGATGCCTCG 1404
Query 1529 GACTCTGTTTCCACAATGTATGACATGTCGCTCATTGACATTGATATATCGAGCTACCCT 1588
|| ||| || ||||||||||| ||||||||||||||||| ||| |||| || | |||
Sbjct 1405 GATTCTCTTGATACAATGTATGATATGTCGCTCATTGACATCGATCTATCTAGTTTCCCC 1464
Query 1589 AGCAAGGTACCTTCTGCAAAT-ATAAGTGGAGGACCTAAATAGTGAGTCA-A-ATGATGT 1645
||||| ||||| ||||||| | | |||||| | |||| |||| ||| || | | |||||
Sbjct 1465 AGCAATGTACCCTCTGCAAGTGA-AAGTGG-G--CCTAGATAG-GAG-CAGACAAGATGT 1518
Query 1646 AGAA-TCCACCATTAACAG-TAACAAAA 1671
|||| || ||||||||||| || |||||
Sbjct 1519 AGAAATC-ACCATTAACAGGTA-CAAAA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5