BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05950.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477892 jgi|Araly1|477892|fgenesh2_kg.3__593__AT3G05950.1 1188 0.0
Ahg497466 jgi|Araly1|497466|fgenesh2_kg.549__1__AT3G05950.1 965 0.0
> Ahg477892 jgi|Araly1|477892|fgenesh2_kg.3__593__AT3G05950.1
Length=755
Score = 1188 bits (643), Expect = 0.0
Identities = 719/756 (95%), Gaps = 4/756 (1%)
Strand=Plus/Plus
Query 4 TCCTTACCACAAAGCTA-AG-GATAAAGAAAATAAATAGTAAATGGAAGGGTTTCTTCGC 61
||||||||||||||||| || |||||||||| ||||| ||||||||||| |||||||||
Sbjct 1 TCCTTACCACAAAGCTAGAGATATAAAGAAAAGAAATAATAAATGGAAGGCTTTCTTCGC 60
Query 62 TTTCTTGTAGCGAAAGCCATCTTATTGGCTTTAGCATCTTCATTTGTATCTTGTTACGAC 121
|| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 TTCCTTGCAGCGAAAGCCATCTTGTTGGCTTTAGCATCTTCATTTGTATCTTGTTATGAC 120
Query 122 CCAAGTCCTCTTCAGGACTTTTGTGTTGCCGTCGATGACGCTAGTGGTGTTTTCGTGAAT 181
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 121 CCAAGTCCTCTTCAAGACTTTTGTGTTGCCGTCGATGACGCTAATGGCGTTTTCGTGAAT 180
Query 182 GGAAAATTCTGCAAAGACCCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCCGGACTA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GGAAAATTCTGCAAAGACCCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCTGGACTA 240
Query 242 AACATCGCCGGAAACACAATAAACCGCGTTGGCTCCAACGTTACAAACGTTAACGTTGAC 301
||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 AACATTGCCGGAAACACTATAAACCGCGTTGGCTCCAACGTTACAAACGCTAACGTTGAC 300
Query 302 AAAATCCCTGGACTCAACACCCTCGGAGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGA 361
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAAATCCCTGGACTCAACACACTCGGTGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGA 360
Query 362 GGTCAAAACCCGCCACACACGCACCCACGAGCCACTGAGATCCTCGTGGTTGTCGAAGGA 421
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GGTCAAAACCCACCACACACGCACCCACGAGCCACCGAGATCCTCGTGGTTGTCGAAGGA 420
Query 422 ACACTCTTAGTCGGTTTTGTAACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTT 481
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACGCTCTTAGTCGGGTTTGTGACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTT 480
Query 482 CTTTACCCGGGAGACGT-TTTCGTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGT 540
||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 481 CTTTACCCGGGAGACGTATTT-GTGTTTCCCATAGGGATGATACATTTTCAAGTGAACGT 539
Query 541 TGGGAGGACGAACGCAGTTGCGTTTGCTGGTCTTGGTAGCCAAAATCCCGGTACAATCAC 600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 540 TGGGAGGACGAACGCAGTTGCGTTTGCTGGTCTTGGTAGCCAAAATCCAGGTACGATAAC 599
Query 601 AATCGCAGACGCCGTTTTTGGATCGAAGCCTTCGATTATGCCGGAGATTTTAGCAAAAGC 660
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 600 AATCGCAGACGCGGTTTTTGGATCGAAGCCTTTGATTACGCCGGAGATTTTAGCTAAAGC 659
Query 661 GTTTCAGCTGGATGTGAACGTGGTTAAATATCTCGAGGCAAGATTTTCTTCCAATTATGA 720
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 660 GTTTCAGCTGGATGTGAACGTGGTTAGATATCTCGAGGCAAGGTTTTCTTCCAATTATGA 719
Query 721 TCGTCATTATTAACAAGTTAAGAGAATGAAGGGAAA 756
||||||||||||||||||||||||||||| ||||||
Sbjct 720 TCGTCATTATTAACAAGTTAAGAGAATGACGGGAAA 755
> Ahg497466 jgi|Araly1|497466|fgenesh2_kg.549__1__AT3G05950.1
Length=594
Score = 965 bits (522), Expect = 0.0
Identities = 571/595 (96%), Gaps = 2/595 (0%)
Strand=Plus/Plus
Query 140 TTTTGTGTTGCCGTCGATGACGCTAGTGGTGTTTTCGTGAATGGAAAATTCTGCAAAGAC 199
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 TTTTGTGTTGCCGTCGATGACGCTAATGGCGTTTTCGTGAATGGAAAATTCTGCAAAGAC 60
Query 200 CCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCCGGACTAAACATCGCCGGAAACACA 259
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 61 CCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCTGGACTAAACATTGCCGGAAACACT 120
Query 260 ATAAACCGCGTTGGCTCCAACGTTACAAACGTTAACGTTGACAAAATCCCTGGACTCAAC 319
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATAAACCGCGTTGGCTCCAACGTTACAAACGCTAACGTTGACAAAATCCCTGGACTCAAC 180
Query 320 ACCCTCGGAGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGAGGTCAAAACCCGCCACAC 379
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ACACTCGGTGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGAGGTCAAAACCCACCACAC 240
Query 380 ACGCACCCACGAGCCACTGAGATCCTCGTGGTTGTCGAAGGAACACTCTTAGTCGGTTTT 439
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 ACGCACCCACGAGCCACCGAGATCCTCGTGGTTGTCGAAGGAACGCTCTTAGTCGGGTTT 300
Query 440 GTAACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTTCTTTACCCGGGAGACGT- 498
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTTCTTTACCCGGGAGACGTA 360
Query 499 TTTCGTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGTTGGGAGGACGAACGCAGT 558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTT-GTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGTTGGGAGGACGAACGCAGT 419
Query 559 TGCGTTTGCTGGTCTTGGTAGCCAAAATCCCGGTACAATCACAATCGCAGACGCCGTTTT 618
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 420 TGCGTTTGCTGGTCTTGGTAGCCAAAATCCAGGTACGATAACAATCGCAGACGCGGTTTT 479
Query 619 TGGATCGAAGCCTTCGATTATGCCGGAGATTTTAGCAAAAGCGTTTCAGCTGGATGTGAA 678
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TGGATCGAAGCCTTTGATTACGCCGGAGATTTTAGCTAAAGCGTTTCAGCTGGATGTGAA 539
Query 679 CGTGGTTAAATATCTCGAGGCAAGATTTTCTTCCAATTATGATCGTCATTATTAA 733
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CGTGGTTAGATATCTCGAGGCAAGGTTTTCTTCCAATTATGATCGTCATTATTAA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5