BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05960.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473 2538 0.0
Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234 1280 0.0
> Ahg317457 jgi|Araly1|317457|fgenesh1_pm.C_scaffold_3000473
Length=1524
Score = 2538 bits (1374), Expect = 0.0
Identities = 1474/1524 (97%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTTGTTGTGTCTAATGCCAATGCTCCGGCCTTTGAGGCCAAGATGACTGTCTAT 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGTTGTTGTTTCTAATGCTAATGCTCCGGCCTTTGAGGCCAAGATGACTGTCTAT 60
Query 61 GTATTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACATCGGA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTCTTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACATAGGA 120
Query 121 ATTTCCGGTGGAGTAAGTGCAATGGACGATTTCCTGAAGGAATTTTTCCCAGCGGTGTGG 180
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 121 ATTTCCGGTGGAGTAAGTGCGATGGACGATTTCCTGAAGGAATTTTTCCCGGCTGTGTGG 180
Query 181 GAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTCTTGCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTCTTGCAA 240
Query 241 CTGTTCACCTCGTCTCTTTACCTAGCTGCACTCGTGGCCAGTTTCGTCGCGTCCGCCACC 300
|| ||||||||||| |||||||||||||| ||||||||||| ||| |||| |||||||||
Sbjct 241 CTATTCACCTCGTCCCTTTACCTAGCTGCCCTCGTGGCCAGCTTCTTCGCTTCCGCCACC 300
Query 301 TGTTCTAAACTTGGACGCAGGCCGACGATGCAGTTTGCTTCTATCTTCTTCTTGATTGGT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TGTTCTAAACTTGGACGCAGGCCGACTATGCAGTTTGCTTCTATCTTCTTCTTGATTGGT 360
Query 361 GTCGGTCTCACTGCAGGAGCCGTTAACCTCGTCATGTTGATCATTGGAAGACTCTTTCTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GTCGGTCTCACTGCAGGAGCCGTTAACCTCGTCATGTTGATCATTGGAAGACTCTTCCTT 420
Query 421 GGCTTTGGTGTTGGATTTGGCAATCAGGCAGTGCCTCTTTTCCTGTCTGAGATTGCTCCA 480
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GGCTTTGGTGTCGGATTTGGCAATCAGGCAGTGCCGCTTTTCCTGTCTGAGATTGCTCCA 480
Query 481 GCACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCGGAATCCTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCGGAATCCTA 540
Query 541 ATTGCCAACATTGTCAACTACTTCACTGCCACGGTTCACCCTTACGGATGGAGGATTGCT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 541 ATTGCCAACATTGTCAACTACTTCACTGCCACGGTCCACCCTTACGGATGGCGAATTGCT 600
Query 601 CTCGGTGGAGCTGGAATTCCCGCTGTTATCCTCCTCTTCGGTTCACTACTTATCATTGAG 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CTCGGTGGAGCCGGAATTCCCGCTGTTATCCTTCTCTTCGGTTCACTACTTATCATTGAG 660
Query 661 ACTCCCACAAGTCTCATCGAGCGCAACAAGAACGAAGAAGGAAAAGAAGCCCTAAGGAAG 720
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACGCCCACAAGCCTCATCGAGCGCAACAAGAATGAAGAAGGAAAAGAAGCCCTAAGGAAG 720
Query 721 ATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCATGCATGTGACATC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 721 ATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCATGCCTGCGACATC 780
Query 781 GCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCCGCGAGTCGCCCACCGTTC 840
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 781 GCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCTGCTAGTCGCCCACCGTTC 840
Query 841 ATCATCGGAATGCTTCTCCAGCTTTTCCAACAATTTACCGGAATCAATGCGATTATGTTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCATCGGAATGCTTCTCCAGCTTTTCCAACAATTTACCGGAATCAATGCGATTATGTTC 900
Query 901 TATGCGCCGGTCTTATTCCAAACTGTTGGGTTCGGAAGCGACGCAGCCCTTCTCTCTGCG 960
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 901 TATGCACCGGTTTTATTCCAAACTGTTGGATTCGGAAGCGACGCAGCTCTTCTCTCTGCG 960
Query 961 GTTATCACCGGATCGATCAATGTTCTCGCCACGTTCGTTGGGATTTACCTCGTTGACAGA 1020
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 961 GTTATCACCGGAACAATCAATGTTCTCGCCACATTCGTTGGGATTTACCTCGTTGACAAA 1020
Query 1021 ACCGGCAGGAGGTTCCTTCTTCTCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATC 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCGGCAGGAGATTCCTTCTTCTCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATC 1080
Query 1081 ATTGGAATCATCCTAGCAAAGGACTTGGGCGTAACGGGAACACTCGGGAGGCCACAAGCC 1140
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 ATTGGAATCATCCTAGCAAAGGACTTGGGTATAACGGGAACACTCGGGAGGCCACAAGCC 1140
Query 1141 CTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGATTTGCATGGTCATGGGGACCT 1200
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1141 CTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGCTTTGCATGGTCATGGGGACCC 1200
Query 1201 TTGGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAAACACGTAGCGCAGGATTCGCT 1260
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 TTAGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAAACCCGTAGCGCAGGATTCGCT 1260
Query 1261 GTTGCAGTCTCATGCAACATGTTCTTCACTTTTGTAATCGCTCAAGCCTTCCTATCGATG 1320
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 GTTGCAGTCTCGTGCAACATGTTCTTCACTTTCGTAATCGCTCAAGCCTTCCTATCGATG 1320
Query 1321 CTTTGCGGGATGAGATCTGGAATATTCTTCTTCTTCAGCGGTTGGATCATTGTGATGGGA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 CTTTGCGGGATGAGATCTGGAATATTCTTCTTCTTCAGCGCTTGGATCATTGTGATGGGA 1380
Query 1381 CTGTTTGCGTTTTTCTTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGGGAG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 CTGTTTGCGTTTTTCTTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGAGAG 1440
Query 1441 AGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCAT 1500
Query 1501 GACATAGAGAAGAGAAATGCTTGA 1524
||| | ||||||||||||||||||
Sbjct 1501 GACGTTGAGAAGAGAAATGCTTGA 1524
> Ahg351641 jgi|Araly1|351641|fgenesh1_pg.C_scaffold_6002234
Length=1524
Score = 1280 bits (693), Expect = 0.0
Identities = 1244/1509 (82%), Gaps = 42/1509 (3%)
Strand=Plus/Plus
Query 36 CTTT-GAGGCCAAGATGACTGTCTATGTATTCATCTGCGTTATGATTGCCGCTGTCGGCG 94
|||| || || ||||||||||| ||||| |||||||| || || || || ||||| ||||
Sbjct 38 CTTTCGACGCGAAGATGACTGTTTATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCG 97
Query 95 GTTTGATCTTCGGTTACGACATCGGAATTTCCGGTGGAGTAA-GTGCAATGGACGATTTC 153
|||||||||||||||||||||||||||| || |||||||||| | || ||||||||||||
Sbjct 98 GTTTGATCTTCGGTTACGACATCGGAATCTCTGGTGGAGTAACG-GCGATGGACGATTTC 156
Query 154 CTGAAGGAATTTTTCCCAGCGGTGTGGGAGAGGAAGAAGCACGTACACGAGAACAACTAC 213
||||||||||||||||| | |||| |||||||||||||| | || |||||||||||
Sbjct 157 TTGAAGGAATTTTTCCCATCTGTGTACGAGAGGAAGAAGCATGCGCATGAGAACAACTAT 216
Query 214 TGCAAGTACGATAACCAGTTCTTGCAACTGTTCACCTCGTCTCTTTACCTAGCTGCACTC 273
||||||||||| |||||||||||||| || ||||| || ||||| ||||| || || ||
Sbjct 217 TGCAAGTACGACAACCAGTTCTTGCAGCTCTTCACTTCCTCTCTATACCTTGCGGCTCTA 276
Query 274 GTGGCCAGTTTCGTCGCGTCCGCCACCTGTTCTAAACTTGGACGCAGGCCGACGATGCAG 333
||||| || ||| | || ||||| || || ||||| || |||||||| || || ||||||
Sbjct 277 GTGGCTAGCTTCTTTGCTTCCGCTACGTGCTCTAAGCTCGGACGCAGACCCACAATGCAG 336
Query 334 TTTGCTTCTATCTTCTTCTTGATTGGTGTCGGTCTCA-CTGCAGGAGCCGTTAACCTCGT 392
| ||||| || ||||||||||| ||||| || || | | || ||||| |||||| | |
Sbjct 337 CTCGCTTCCATTTTCTTCTTGATCGGTGTTGGCCT-AGCCGCGGGAGCTGTTAACATT-T 394
Query 393 -CATGTTGATCATTGGAAGACTCTTTCTTGGCTTTGGTGTTGGATTTGGCAATCAGGCAG 451
|||||||||| |||| ||| |||| ||||| || |||||||| ||||| |||||||| |
Sbjct 395 ACATGTTGATCTTTGGTAGAATCTTGCTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGG 454
Query 452 TGCCTCTTTTCCTGTCTGAGATTGCTCCAGCACAG-CTCCGAGGAGGTCTCAACATTGTA 510
| || |||||| | || ||||||||||| || || || || |||||||||||||||||
Sbjct 455 TACCACTTTTCTTATCAGAGATTGCTCCGGCT-AGGCTTCGTGGAGGTCTCAACATTGTT 513
Query 511 TTCCAACTCATGGTTACAATCGGAATCCTAATTGCCAACATTGTCAACTACTTCAC-TGC 569
|||||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| | |
Sbjct 514 TTCCAACTAATGGTTACAATTGGAATCCTAATCGCTAACATAGTCAACTACTTCACCT-C 572
Query 570 CACGGTTCACCCTTACGGATGGAGGA-TTGCTCTCGGTGGAGCTGGAATTCCCGCTGTTA 628
| | |||| |||||||||||| | | |||| || ||||| || |||||||| ||| | |
Sbjct 573 CTCAATTCATCCTTACGGATGGCG-ACTTGCCCTTGGTGGCGCGGGAATTCCTGCTCTCA 631
Query 629 TCCTCCTCTTCGGTTCACTACTTATCATT-GAGACTCCCACAAGTCTCATCGAGCGCAAC 687
||||||||||||| ||||| || ||| | || || || |||||||||||||| || |||
Sbjct 632 TCCTCCTCTTCGGATCACTTCTCATC-TGCGAAACACCAACAAGTCTCATCGAACGGAAC 690
Query 688 AAGAACGAAG-AAGGAAAAGAAGCCCT-AAGGAAGATCAGAGGAGTTGATGATATCAATG 745
|| ||| ||| |||| |||||| | || ||| ||||| ||||| ||||| ||| | |||
Sbjct 691 AA-AACCAAGGAAGGCAAAGAAACGCTCAAG-AAGATTAGAGGCGTTGAAGATGTTGATG 748
Query 746 ACGAGTATGAGTCTATCGTCCATGCATGTGACATCGCGAGTCAAGTCAAGGACCCTTACA 805
| |||||||| || ||||||||||| || || ||||||| || ||||||||||||||||
Sbjct 749 AGGAGTATGAATCAATCGTCCATGCTTGCGATTTCGCGAGGCAGGTCAAGGACCCTTACA 808
Query 806 GGAAACTGTTGAAGCCCGCGAGTCGCCCACCGTTCATCATCGGAATGCTT-CTCCAGCTT 864
||||||| |||| |||||||| || || || ||| | || |||||| || |||||| ||
Sbjct 809 CGAAACTGATGAAACCCGCGAGCCGACCGCCTTTCGTGATAGGAATG-TTGCTCCAGTTT 867
Query 865 TTCCAACAATTTACCGGAATCAATGCGATTATGTTCTATGCGCCGGTCTTATTCCAAACT 924
||||||||| | || |||||||| || |||||||||||||| ||||| || ||||| ||
Sbjct 868 TTCCAACAACTCACTGGAATCAACGCAATTATGTTCTATGCTCCGGTTTTGTTCCAGACC 927
Query 925 GTTGGGTTCGGAAGCGACGCAGCCCTTCTCTCTGCGGTTATCACCGGATCGATCAATGTT 984
|| ||||| |||| |||||||| || || || ||||||||||| ||| | ||||| |||
Sbjct 928 GTAGGGTTTGGAAATGACGCAGCTCTGCTTTCCGCGGTTATCACGGGAACTATCAACGTT 987
Query 985 CTC-GCCACGTTCGTTGGGATTTACCTCGTTGACAGAACCGGCAGGAGGTTCCTTCTT-C 1042
||| || ||||| || ||||||| |||||| |||| ||||||| | || || || || |
Sbjct 988 CTCAGC-ACGTTTGTCGGGATTTTCCTCGTCGACAAAACCGGCCGAAGATTTCTA-TTGC 1045
Query 1043 TCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATCATTGGAATCATCCTAGCAAAGG 1102
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1046 TCCAGTCTTCCGTTCACATGCTCGTCTGCCAGTTGGTCATTGGAATCATCCTAGCCAAGG 1105
Query 1103 ACTTGGGCGTAACGGGAACACTCGGGA-GGCCACAAGCCCTAGTAGTGGTGATCTTTGTG 1161
|| | | ||| ||||| ||||| || | |||||||||||||||||||||||||||| |||
Sbjct 1106 ACCTAGACGTGACGGGTACACTAGG-ACGGCCACAAGCCCTAGTAGTGGTGATCTTCGTG 1164
Query 1162 TGCGTTTACGTGATGGGATTT-GCATGGTCATGGGGACCTTTGGGATGGCTAATTCCTAG 1220
||||||||||||||||| ||| || ||||||||||| ||| | ||||||||||| |||||
Sbjct 1165 TGCGTTTACGTGATGGG-TTTCGCTTGGTCATGGGGTCCTCTAGGATGGCTAATCCCTAG 1223
Query 1221 CGAGACGTTTCCTC-TAGAAACACGTAGCGCAGGATTCGCTGTTG-CAGTCTCATGCAAC 1278
|||||| || || | | || || || | || ||| |||||| ||| | || || ||||||
Sbjct 1224 CGAGACCTTCCC-CGTGGAGACTCGAACCGAAGGGTTCGCT-TTGGCGGTGTCGTGCAAC 1281
Query 1279 ATGTTCTTCACTTTTGTAATCGCTCAAGCCTTCCTATCGATGCTTTGCGGGATGA-GATC 1337
||||||||||| || || |||||||| |||||||| ||||||||||||||||||| | ||
Sbjct 1282 ATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTGTCGATGCTTTGCGGGATGAAG-TC 1340
Query 1338 TGGAATATTCTTCTTCTTCAGCGGTTGGATCATTGTGATGGGACTGTTT-GCGTTT-TTC 1395
|| ||||||||||||||||| ||||||||| ||||||||||||| ||| || ||| |||
Sbjct 1341 AGGTATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATGGGACT-TTTCGC-TTTGTTC 1398
Query 1396 TTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGGGAGAGTGTGTGGAAGCCA 1455
||| | || ||||| |||||| |||| || ||||||||||| || || |||||||||| |
Sbjct 1399 TTCGTGCCGGAGACGAAAGGAGTCGCGATCGATGACATGAGAGATAGCGTGTGGAAGCTA 1458
Query 1456 CATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCATGACATAGAGAAGAGA 1515
||||||| |||||| |||| ||||||| ||||| || | |||||| |||||||||||
Sbjct 1459 CATTGGTACTGGAAGAGGTTTATGCTT---GAGGAAGATGAGCATGACGTAGAGAAGAGA 1515
Query 1516 AATGCTTGA 1524
| || ||||
Sbjct 1516 ACTGATTGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5