BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05975.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928214 jgi|Araly1|928214|scaffold_300671.1 865 0.0
> Ahg928214 jgi|Araly1|928214|scaffold_300671.1
Length=613
Score = 865 bits (468), Expect = 0.0
Identities = 538/572 (94%), Gaps = 4/572 (1%)
Strand=Plus/Plus
Query 1 ATGTCCAAGCGACGCATTTGCTGCATAGTTTCCGGAATCATCT-TTGTCCTCTTCGTAAT 59
|||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 23 ATGTCCAAACGACGCATTTGCTGCATAGTTTCCGCAATCAT-TATTGTCCTCTTCGCCAT 81
Query 60 CTTCATGACCGCTTTGATCCTTGCACAAGTGTTCAAACCAAAACATCCGATACTACAAAC 119
||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 82 CTTCATGGCCGCTTTGATCCTTGCGCAAGTGTTCAAACCAAAACATCCCATTCTACAAAC 141
Query 120 CGTCTCTTCAACTGTTGATGGCATATCTACAAATATATCACTACCATACGAGGTCCAACT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 142 CGTCTCTTCAACTGTTGATGGCATATCTACAAATATATCACTACCATATGAGGTCCAACT 201
Query 180 AAATTTCACTCTTACGCTGGAGATGCTGCTCAAGAATCCTAACGTTGCGGATTTTGAATA 239
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 202 AAATTTCACTCTTACACTTCAGATGCTGCTCAAGAATCCTAACGTTGCGGATTTTGAATA 261
Query 240 CAAGACAGTGGAAAACTTGGTTTATTACAGGGATACACTAGTCGGAAATCTCACACTTCC 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 262 CAAGACAGTGGAAAACTTGGTTTATTACAGGGATACACTAGTGGGAAATCTCACTCTTCC 321
Query 300 TTCGAGCACATTACCTGCCAAAGGTTCAGTGCTTTTGCCATGTCCTCTATTTCTCCAGCT 359
|||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||
Sbjct 322 TTCGAGCACATTACCTGCCAAAGGCTCAGTGCTTTTGGCATGTCCTCTTTTTCTTCAGCT 381
Query 360 CGATAAATTTGTCGCGAATTTAGGTGATATCGTGCAAGATGTATTGCATGGAAAAATTGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CGATAAATTTGTCGCGAATTTAGGTGATATCGTGCAAGATGTATTGCATGGAAAAATTGT 441
Query 420 GATGGAGACAAGAG-CAAAAATGCCAGGAAAAATCACTTTGTTGGGAATCTTTAAGATAC 478
||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct 442 GATGGAGACAA-AGGCAAGAATGCCAGGAAAAATCACGTTGTTGGGAATCTTTAAGATTC 500
Query 479 CTTTGGATTCAATATCGCATTGCAATCTCGTACTCGGCTTTCCTTCAATGGTAGTGGAGG 538
|||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||
Sbjct 501 ATTTGGATTCAATATCGCATTGCAACCTCGTACTTGGCTTTCCTTCGATGGAAGTGGTGG 560
Query 539 ACCAAGTGTGTGATCTCAAAACTAAGCTGTAA 570
| |||||||||||||||| ||||||||||||
Sbjct 561 ATCAAGTGTGTGATCTCAGCACTAAGCTGTAA 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5