BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05980.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928215 jgi|Araly1|928215|scaffold_300672.1 1155 0.0
> Ahg928215 jgi|Araly1|928215|scaffold_300672.1
Length=788
Score = 1155 bits (625), Expect = 0.0
Identities = 728/777 (94%), Gaps = 10/777 (1%)
Strand=Plus/Plus
Query 170 TAGAAGAAATGGTTTTAGAGACGGTTTCAAAGACGGAACCACCACCGTTGCTTGGACCTC 229
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 13 TAGAAGAAATGGTTTCAGAGACGGTTTCAAACACGGAATCACCACCGTTGCTTGGACCTC 72
Query 230 GTATCTCCTTCTCATCTGATTTATCTGACGGTGGAGATTTCATCTGCATCACCCCCGTAA 289
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 73 GTATTTCCTTCTCAGCTGATTTATCCGACGGTGGAGATTTCATCTGCATCACCCCCGTAA 132
Query 290 TGTGT----A---AG-G-AAGATGTCGTCAAAGGGTCAGTGAAAGTCTCCGACTTTGAGT 340
||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TGTGTAAGGAGTTAGAGAAAGATGTCGTCAAAGGGTCAGTGAAAGTCTCCGACTTTGAGT 192
Query 341 TCTTGTCGTCGGAAAATGTGAGTCCACAGAGAATGCTTACCGCCGATGAACTCTTCTCCG 400
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 193 TCTTGTCGTCTGAAAATGTGAGTCCCCAGAGAATGCTTACCGCTGATGAACTCTTCTCCG 252
Query 401 AAGGTAAATTGCTTCCTTTTTGGCAAGTAAAGCACTCAGAGAAGCTTAAAAACATTACTT 460
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 253 AAGGTAAGTTGCTTCCTTTTTGGCAAGCAAAGCACTCAGAGAAGCTTAAAAACATTACTT 312
Query 461 TgaagacgaacgaagaggaagaagcagagaaacgtaaagtggaagtgaagaagaaagaTC 520
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 313 TGAAGACGAACGAAGAAGAAGAAGGAGAGAAACGTAAAGTGGAAGTGATGAAGAAAGATC 372
Query 521 AGGAGATTAACAATAGAGATAACAGAGTGACTTGGTTTATAGACGAAGATCCGTCTCCTC 580
|||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 373 AGGAGATTAATAATAGAGACAACAGAGTGAGTTGGTTTATAGACGAAGATCCATCTCCTC 432
Query 581 GTCCTCCCAAGTGTACCGTTCTTTGGAAAGAGCTTTTGAGATTGAAGAAACAGAGGAATC 640
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTCCTCCTAAATGTACGGTTCTTTGGAAAGAGCTTTTGAGATTGAAGAAACAGAGGAATC 492
Query 641 CGTCTTCTTCGCCGGTGACGGCGAGGACAGTGTCGTCTTTGTCTCCGTCGTCGTCCACGT 700
||||||| ||| ||||| | | |||||| ||||| ||| |||||||||||||||||||||
Sbjct 493 CGTCTTCGTCGTCGGTGGCAGTGAGGACGGTGTCTTCTCTGTCTCCGTCGTCGTCCACGT 552
Query 701 CATCATCAAGTTCACTTGAGGACGCAGCgaagagagaggagaaagagaaagaagggaaga 760
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 553 CATCATCGAGCTCGCTTGAGGATGCAGCGAAGAGAGAGGAGAAAGAGAAAGAAGGGAAGA 612
Query 761 gaggtaagaaaggattagagagaacgagaTCGGCGAGTATGAGGATAAGGCCAATGATTC 820
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 GAGGTAAGAAAGGATTAGAGAGAACGAGATCGGCGAGTATGAGGATAAGGCCGATGATTC 672
Query 821 ATGTTCCTATTTGCACTCCTTCTAAATCCTCTCTTCCTTTGCCTCCTCTGTTTCCTCTTT 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ATGTTCCTATTTGCACTCCTTCTAAATCCTCTCTTCCTTTGCCTCCTCTGTTTCCTCTTG 732
Query 881 CGCTTAAGAAAAACAGAGTAGAGAGACGCGCCTAGAAGATTTGATCTATCTTTGGAT 937
||||||||||||||||||||||| ||||| | |||||||||||| || |||||||||
Sbjct 733 CGCTTAAGAAAAACAGAGTAGAGCGACGCACTTAGAAGATTTGAGCT-TCTTTGGAT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5