BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06000.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477898 jgi|Araly1|477898|fgenesh2_kg.3__599__AT3G06000.1 872 0.0
> Ahg477898 jgi|Araly1|477898|fgenesh2_kg.3__599__AT3G06000.1
Length=645
Score = 872 bits (472), Expect = 0.0
Identities = 592/648 (91%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGACACTAGCTTAACCAATGAGGATACTATAGAGGAGACTGC-ATTCGAGACTTG 59
||||| || |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1 ATGGTAGAGACTAGCTTGACCAATGAGGATACTATAGAGGAGAATGCAATT-GAGACTTG 59
Query 60 TACTCATATAAAAGTTGGAGTTTCTATGAGCAAACCATTTTCAAGCTTCAGTTTCTTGAC 119
|||||||||||||||||||||||||||||||||| || |||||||||| | |||||||||
Sbjct 60 TACTCATATAAAAGTTGGAGTTTCTATGAGCAAAGCAGTTTCAAGCTTTAATTTCTTGAC 119
Query 120 TGTAATTAATCTAAGTTATACAAATCTAGAGAATGGAGGTGCTATAGCTTTAGTAAACGC 179
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTAATTACCCTAAGTTATACCAATCTAGAGAATGGAGGTGCTATAGCTTTAGTAAACGC 179
Query 180 TCTCAAGAACTCCGCTCCATCTCTTCAAGTTATAGAAATGGCTGGAAATAACATAACTTA 239
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCAAGAACTCTGTTCCATCTCTTCAAGTTATAGAAATGGCTGGAAATAACATAACTTA 239
Query 240 TGAGGCGGCTACAGCTATCGCAGTTTGTTTGGCAGCAAAGAGACATCTGAAAAAGTTGAA 299
|||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 240 TGAGGCGGCTCCAGCTATCGCAGTTTTTTTGGCAGCAAAGCGACATCTGAAAAAGTTGAA 299
Query 300 TTTGTCTGAAAATGATCTAAAAGATGAGGGATGTGTTGAGATTGTAAAGAGTATGGAAGA 359
||||| || ||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 300 CTTGTCAGAGAATAATCTAAAAGATGAGGGATGTCTTGAGATTGTAAAGAGTATGGATGG 359
Query 360 TTGGGAGTTAGAATATGTTGATATGAGCTACAATGACTTGAGAAGAGAAGGAGCATTGCG 419
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 360 TTTGGAGTTAGAATATGTTGATATGAGCTTCAATGACTTGAGAAGAGAAGGAGCATTGGG 419
Query 420 CTTGGCTCGTGTTGTTGTCAAGAAAGGAAGTTTCAAGATGTTGAACATTGATGGAAATAT 479
|||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 420 CTTGGCTCGTGTTGTTATCAAGAAAGAAAGTTTTAAGATGTTGAACATTGATGGGAATAT 479
Query 480 GATCTCTCTTAAAGGCATTGAGGAAATCAAAGTGATATTCACGAATTGTCCAAAGTTACT 539
||||||| |||||||||||||||||||||||| |||||||| ||||||| | ||||||||
Sbjct 480 GATCTCTGTTAAAGGCATTGAGGAAATCAAAGAGATATTCAAGAATTGTTCTAAGTTACT 539
Query 540 TGGACCTTTGGATAAGAACGTATA-TAATGTG-gatgatgatgatgatttaagagagaat 597
|||||||||||||||||| | | | || | || ||||||||||||||||||||||||
Sbjct 540 TGGACCTTTGGATAAGAATG-ACCCTCTTG-GAGAGGATGATGATGATTTAAGAGAGAAT 597
Query 598 ---ga---t---gaagatgaATTTGTGAGTGTATTTATCTTTTATTAG 636
|| | ||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTGAAGATTTTGAAGATGAATTTGTGAGTGTATTTATCTTTTATTAG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5