BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06010.1
Length=3710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903463 jgi|Araly1|903463|Al_scaffold_0003_591 4571 0.0
Ahg488814 jgi|Araly1|488814|fgenesh2_kg.6__1948__AT5G19310.1 2747 0.0
> Ahg903463 jgi|Araly1|903463|Al_scaffold_0003_591
Length=3393
Score = 4571 bits (2475), Expect = 0.0
Identities = 2620/2690 (97%), Gaps = 9/2690 (0%)
Strand=Plus/Plus
Query 817 AGAGGTTATCACGTTTAGAAGAAGAGGAGAAGAATCTGATTGAAACTGCCAAGAGGAAAT 876
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 710 AGAGGTTATCACGTTTAGAAGAAGAGGAGAAGAATCTGATTGAAACCGCCAAGAGGAAAT 769
Query 877 TCTTTGCAGAAGTACTCAATGCAGTACGTGAATTCCAGTTGCAAATTCAGGCGACTCAAA 936
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 770 TCTTTGCAGAAGTACTTAATGCAGTTCGTGAATTCCAGTTGCAAATTCAGGCGACTCAAA 829
Query 937 AACGCCGTAGGCAAAGGAATGATGGTGTGCAGGCTTGGCATGGGAGACAAAGACAACGCG 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 AACGCCGTAGGCAAAGGAATGATGGTGTGCAGGCTTGGCATGGGAGACAAAGACAACGTG 889
Query 997 CTACCCGTGCTGAAAAGTTGAGGCTCATGGCCCTTAAGTCCGATGATCAAGAGGCATACA 1056
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 890 CTACCCGTGCTGAAAAGTTGAGGCTCATGGCCCTTAAGTCTGATGATCAAGAGGCATACA 949
Query 1057 TGAAACTAGTAAAGGAGAGTAAAAATGAAAGACTAACCACTCTTTTAGAGGAGACAAACA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGAAACTAGTAAAGGAGAGTAAAAATGAAAGACTAACCACTCTTTTAGAGGAGACAAACA 1009
Query 1117 AACTCCTTGCTAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATGCTAAACTTCCGGAAG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AACTCCTTGCTAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATGCTAAACTTCCGGAAG 1069
Query 1177 GCATTGATCTACTTAAAGACTCAGAATCTGACTTGTCTGAACTTGATGCTCCAAGAAGTG 1236
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1070 GCATTGATCTTCTTAAAGACTCAGAATCTGACTTGTCTGAACTTGATGGTCCAAGAAGTG 1129
Query 1237 AACCATTGCAGGATCTGCTTCCTGATCAGGATATAGATATTACTGAGTCTGACAATAACG 1296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1130 AACCATTGCAGGATCTGCTTCCTGATCAGGATATTGATATTACTGAGTCTGACAATAACG 1189
Query 1297 ATGACTCTAATGATTTACTAGAAGGACAGAGGCAGTATAACTCGGCTATCCATTCAATAC 1356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1190 ATGACTCTAATGATTTACTAGAAGGACAGAGGCAGTATAACTCTGCTATCCATTCAATAC 1249
Query 1357 AAGAGAAGGTGACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAAT 1416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1250 AAGAGAAGGTGACGGAGCAGCCCTCACTTCTAGAAGGTGGGGAACTACGATCCTATCAAT 1309
Query 1417 TAGAAGGGCTTCAATGGATGGTTTCTCTATTCAACAATAACCTCAATGGAATATTAGCTG 1476
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1310 TAGAAGGGCTCCAATGGATGGTTTCTCTATTCAACAATAACCTCAATGGAATTTTAGCTG 1369
Query 1477 ATGAGATGGGTTTGGGAAAAACTATTCAAACAATTTCTCTGATTGCGTATCTTCTGGAGA 1536
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1370 ACGAGATGGGTTTGGGAAAAACTATTCAAACTATTTCTCTGATTGCGTATCTTCTGGAGA 1429
Query 1537 ATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGG 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGG 1489
Query 1597 TAAACGAGTTTGCAACATGGGTACCAAGCATTGCAGCTTTTCTGTATGATGGACGTTTAG 1656
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1490 TAAACGAGTTTGCAACATGGGTACCAAGCATTGCAGCTTTTCTTTATGATGGACGTTTAG 1549
Query 1657 AGGAAAGGAAAGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAATGTGTTGATAA 1716
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AGGAAAGAAAAGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAATGTGTTGATAA 1609
Query 1717 CCCATTATGATCTTATCATGAGAGATAAAGCATTTTTAAAGAAAATTGAGTGGTACTACA 1776
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1610 CCCATTATGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGAGTGGTACTACA 1669
Query 1777 TGATTGTTGATGAAGGACATCGGCTGAAGAACCACGAATCTGCTCTAGCAAAGACTTTAT 1836
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1670 TGATTGTTGATGAAGGACATCGGCTGAAGAACCATGAATCTGCTCTAGCAAAGACTCTAG 1729
Query 1837 TAACAGGCTATCGTATAAAACGCAGACTTCTGTTGACCGGGACACCCATACAGAATAGCC 1896
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1730 TAACAGGCTATCGTATAAAACGCAGACTTCTGTTAACCGGGACACCCATACAGAATAGCC 1789
Query 1897 TTCAAGAACTATGGTCATTGCTTAATTTTCTCCTTCCTCACATCTTTAACTCGGTTCAGA 1956
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1790 TTCAAGAACTATGGTCATTGCTTAATTTTCTCCTTCCTCACATCTTTAACTCAGTTCAAA 1849
Query 1957 ACTTCGAGGAATGGTTTAATGCTCCTTTCGCTGACCGTGGTAATGTCAGTCTCACGGATG 2016
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1850 ACTTCGAGGAATGGTTTAATGCGCCTTTCGCTGACCGTGGTAATGTCAGTCTTACGGATG 1909
Query 2017 AAGAGGAGCTCTTGATTATTCACCGCCTGCATCATGTTATAAGGCCGTTTATACTGAGAA 2076
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1910 AAGAGGAGCTCTTGATTATCCACCGTCTGCATCATGTTATAAGGCCGTTTATACTGAGAA 1969
Query 2077 GGAAAAAGGACGAAGTAGAGAAATTCCTTCCTGGAAAGACACAGGTCATATTGAAGTGTG 2136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 GAAAAAAGGACGAAGTAGAGAAATTCCTTCCTGGAAAGACACAGGTCATATTGAAGTGTG 2029
Query 2137 ATATGTCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCC 2196
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 ATATGTCGGCATGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCC 2089
Query 2197 TTCAAACAGGATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGT 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TTCAAACAGGATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGT 2149
Query 2257 GTTGTAACCATCCTTATCTATTTGTTGGAGGAGACTACAATATGTGGAAGAAACCTGAGA 2316
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GTTGTAACCATCCCTATCTATTTGTTGGAGGAGACTACAATATGTGGAAGAAACCTGAGA 2209
Query 2317 TTGTGAGAGCTTCAGGGAAATTTGAACTCCTTGATCGTCTCCTTCCAAAACTGCGCAAGG 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TTGTGAGAGCTTCAGGGAAATTTGAACTCCTTGATCGTCTCCTTCCAAAACTGCGCAAGG 2269
Query 2377 CTGGACATAGGATTCTTCTCTTCTCCCAAATGACCCGTCTCATTGACGTTCTTGAGATAT 2436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 CTGGACATAGGATTCTTCTCTTCTCCCAAATGACCCGTCTCATTGACGTTCTTGAGATAT 2329
Query 2437 ACTTGACACTTAATGATTACAAATACCTTAGACTCGATGGTACCACAAAGACAGATCAAA 2496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 ACTTGACACTTAATGATTACAAATACCTTAGACTCGATGGTACCACAAAGACAGATCAAA 2389
Query 2497 GAGGGCTTTTACTGAAGCAATTCAACGAGCCAGATTCTCCCTACTTTATGTTTCTTTTGA 2556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 GAGGGCTTTTACTGAAGCAATTCAACGAGCCAGATTCTCCCTACTTTATGTTTCTTTTGA 2449
Query 2557 GCACGCGTGCTGGAGGTCTCGGTTTGAACTTGCAAACTGCAGACACTGTTATTATCTTTG 2616
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2450 GCACACGTGCCGGAGGTCTTGGTTTGAACTTGCAAACTGCAGACACTGTTATTATCTTTG 2509
Query 2617 ACAGTGATTGGAACCCACAAATGGACCAACAGGCCGAGGATCGAGCTCATCGCATAGGGC 2676
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2510 ACAGTGATTGGAACCCACAAATGGACCAACAGGCCGAGGATCGAGCGCATCGCATAGGGC 2569
Query 2677 AGAAGAAGGAAGTCAGAGTGTTTGTTTTGGTTAGCGTTGGCTCTGTTGAAGAAGTAATAT 2736
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2570 AGAAGAAGGAAGTCAGAGTGTTTGTTTTGGTTAGCGTTGGCTCCATTGAAGAAGTAATAT 2629
Query 2737 TGGAGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAAGCTGGACTTTTCA 2796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 TGGAGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAAGCTGGACTTTTCA 2689
Query 2797 ACACAACTTCCACTGCACAAGACAGAAGAGAGATGCTTGAAGAGATTATGCGTAAAGGAA 2856
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 2690 ACACAACTTCCACTGCACAAGACCGAAGAGAGATGCTTGAAGAGATTATGCGCAAAGGAA 2749
Query 2857 CAAGCTCGCTCGGGACAGATGTCCCCAGTGAGAGAGAAATAAACCGGCTAGCGGCTCGTA 2916
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2750 CAAGCTCGCTTGGGACAGATGTCCCCAGTGAGAGAGAAATAAATCGGCTCGCGGCTCGTA 2809
Query 2917 GTGAGGATGAATTTTGGATGTTTGAGCGAATGGATGAGGAGAGACGAAGGAAGGAGAATT 2976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 GTGAGGATGAATTTTGGATGTTTGAGCGAATGGATGAGGAGAGACGAAGGAAGGAGAATT 2869
Query 2977 ACAGAGCCCGTCTGATGCAAGAGCAAGAAGTCCCTGAGTGGGCGTACACTACTCAGACCC 3036
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2870 ACAGAGCCCGTCTGATGCAAGAGCAGGAAGTCCCTGAGTGGGCGTACACTACTCAGAGCC 2929
Query 3037 AAGAGGAGAAGTTGAACAACGGAAAGTTCCATTTTGGTAGTGTCACAGGTAAGCGAAAAC 3096
|||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2930 AAGATGAGAAGTTGAACAGCGGAAAGTTCAATTTTGGGAGTGTCACAGGTAAGCGAAAAC 2989
Query 3097 GTAAAGAGATTGTTTACAGCGACACACTAAGCGAGTTACAGTGGCTGAAAGCCGTGGAGA 3156
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2990 GTAAAGAGATCGTTTACAGTGACACACTAAGCGAGTTACAGTGGCTGAAAGCCGTGGAGA 3049
Query 3157 GCGGTGAAGACCTGTCAAAACTCTCAATGAGATATAATAGGAGAGAGGAGAACGCAAGCA 3216
||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||
Sbjct 3050 GCGGTGAAGACCTGTCAAAACTCTCTATGAGACATA---GGAGAGAGGAGAACACAAGCA 3106
Query 3217 ACACAAAGACATCAACGAGCAAAAAAGTGATAGAATCTATCCAAACTGTGAGTGATGGGA 3276
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 3107 ACACAAAGACACCAACGAGTAAAAAAGCGATAGAATCTATCCAAACTGTGAGTGATGGGA 3166
Query 3277 Cgagcgaggaggatgaagaagagcaagaagaagaa-a--gagcgaaggagatgagtggaa 3333
||||||||||||| ||||||||| ||||||||||| | |||| ||||||||||||||||
Sbjct 3167 CGAGCGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGATAGAGCAAAGGAGATGAGTGGAA 3226
Query 3334 aacagagagtggacaagtctgaagaggaagaagaagaaggtgaagaagagaaTGATGGAA 3393
||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 3227 AACGGAGAGTGGAGAAGTCTGAAGA--A-GAAGAAGAAGGTGAAGAAGAGAATGATGGAA 3283
Query 3394 AGGCAATATTCAAGTGGAATACTCATAAGAAGAAAAGGTCTAGATACTCTTTTACGTGTT 3453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3284 AGGCAATATTCAAGTGGAATACTCATAAGAAGAAAAGGTCTAGATACTCTTTTACGTGTT 3343
Query 3454 CTTCGTCTGACTCTAGAGCTCAAAGTTCCAATGGAAGTAGACGAAAATGA 3503
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3344 CTTCGTCTGACTCTAGAGCTCAAAGTTCCAACGGAAGTAGACGAAAATGA 3393
Score = 547 bits (296), Expect = 2e-154
Identities = 349/373 (94%), Gaps = 9/373 (2%)
Strand=Plus/Plus
Query 195 ATGGTGGCTCAGCAGCTCCAAGAGAGATGCGGCGGCACTTCTCAAGAAGATCCAGTTGAG 254
||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGGCTCAGCAGCTTCAAGAGAGAT---GCGGCAATTCTCAAGAAGATCCAGTTGAG 57
Query 255 ACCACCAAGTCTCTGATCTGTGCTCTCAATTACATTTCTCGTGACCTTCCTTTGCCTCCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ACCACCAAGTCTCTGATCTGTGCTCTCAATTACATTTCTCGTGACCTTCCTTTGCCTCCT 117
Query 315 CACCTCTTCACCGCCGTTTCTTCAATCTACCATGGCGcttcttcttcttctctctctGAC 374
||||||||| |||||||||| || |||||||||||||||||||||||| || || | |||
Sbjct 118 CACCTCTTCGCCGCCGTTTCCTCTATCTACCATGGCGCTTCTTCTTCT-CTTTC-C-GAC 174
Query 375 TCCGATGTCTCTCCGCCGCTACCTACTTCGCCGCCTGCGAATAA---AGCTCCCTATGGA 431
|||||||||||||||||||| |||||||| ||||||| |||||| | |||||||||||
Sbjct 175 TCCGATGTCTCTCCGCCGCTGCCTACTTCCCCGCCTGGGAATAATTTAACTCCCTATGGA 234
Query 432 GCTGATTTGATGGGTGAATTCGAGGATGCACTTTTGAAGCAGAGACCAGATTGTGAATCA 491
| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 GGTGATTTGATGGGTGAGTTCGAGGATGCACTTTTGAAGCAGAGACCAAATTGTGAATCA 294
Query 492 GGCTCTCGATTGATACAATTACTGGATAATCGGAATAAGAGTCATATCCAACGCCGCTTA 551
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 GGCTCTCGATTGATAGAATTACTCGATAATCGGAATAAGAGTCATATCCAACGCCGCTTA 354
Query 552 TCTGAACTTGAAG 564
|||||||||||||
Sbjct 355 TCTGAACTTGAAG 367
Score = 440 bits (238), Expect = 3e-122
Identities = 250/256 (98%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 563 AGAATTACCTTCTACTAGAGGTGAAGATTTGCAGGCAAAGTGCTTACTTGAGCTTTATGG 622
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 405 AGAATTACCTTCTACTAGAGGTGAAGACTTGCAGGCAAAATGCTTACTTGAGCTTTATGG 464
Query 623 GCTTAAGCTACGGGAATTGCAAGGCAAGGTTCGAACCGCGGTGAGCTCGGAATTCTGGCT 682
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GCTTAAGCTACGAGAATTGCAAGGCAAGGTTCGAACCGCGGTGAGCTCGGAATTCTGGCT 524
Query 683 ACGTCTGAACTGTGCAGATGTCAGTAGCCAAGTATTTGACTGGGGCATGATGCGGTTGCC 742
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 525 ACGTCTGAACTGTGCAGATGTCAGTAGCCAACTATTTGACTGGGGCATGATGCGGTTGCC 584
Query 743 TCGTCCATTTTATGGGGTTGGAGATCCTTTTGCTATGGAAGCTGATGATCAGTTCAGAAA 802
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCGTCCATTTTATGGGGCTGGAGATCCTTTTGCTATGGAAGCTGATGATCAGTTCAGAAA 644
Query 803 GAAGCGTGACGCTGAG 818
||||||||| ||||||
Sbjct 645 GAAGCGTGATGCTGAG 660
> Ahg488814 jgi|Araly1|488814|fgenesh2_kg.6__1948__AT5G19310.1
Length=3235
Score = 2747 bits (1487), Expect = 0.0
Identities = 2477/2946 (84%), Gaps = 104/2946 (4%)
Strand=Plus/Plus
Query 243 GATCCAGTTGAGACCACCAAGTCTCTGATCTGTGCTCTCAATTACATTTCTCGTGACCTT 302
||||| || |||| |||||||||||||||| |||||| || ||| ||||||| ||||||
Sbjct 80 GATCCTGTAGAGAAGACCAAGTCTCTGATCTCTGCTCTTAACTACGTTTCTCGCGACCTT 139
Query 303 CCT-TTGCCTCCTCACCTCTTCAC-C-GCCGTTTCTTCAATCTACCATGGCGcttcttct 359
|| |||||| ||||||| || || | |||||||||| ||||||||| | || || |
Sbjct 140 -CTCTTGCCTTCTCACCT-TT-ACGCTTCCGTTTCTTCCATCTACCAT-G-GC-TC--CG 191
Query 360 tcttctctctctGACTCCGATGTCTCTCCGCCGCTACCTACTTCGCCGCCTGCGAATAAA 419
||| | ||||| |||| || ||||| | || || | | | | | | |
Sbjct 192 TCTCCGATCTCT--CTCC----TC-CTCCG-C-CT--CTTCGT-G-AAAAT-TG-TTTTA 236
Query 420 GCTCCCTATGGAGCTGATTTGATGGGTGAATTCGAGGATGCACTTTTGAAGCAGAGACCA 479
||||| || ||| |||||||||| | || ||||| |||||||||||||||||| ||| |
Sbjct 237 -CTCCCAATAGAGGTGATTTGATGAGCGAGTTCGAAGATGCACTTTTGAAGCAGCGACTA 295
Query 480 GATTGTGAATCAGGCTCTCGA-TTGATACAA-TTACTGGATAA-TCGGAATAAGAGTCAT 536
| |||||||||||||||||| ||| ||| ||| ||| || ||| ||||||||| |
Sbjct 296 AACTGTGAATCAGGCTCTCGACTTG-CCCAATTTA-AGGA-AACTCGCTATAAGAGTCGT 352
Query 537 ATCCA-ACGCCGCTTATCTGAACTTGAAGAATTACCTTCTACTAGAGGTGAAGATTTGCA 595
|||| | || |||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 353 TTCCAGA-ATCGATTATCTGAACTTGAAGGATTACCTTCCAATAGAGGTGAAGATTTGCA 411
Query 596 GGCAAAGTGCTTACTTGAGCTTTATGGGCTTAAGCTACGGGAATTGCAAGGCAAGGTTCG 655
|| ||| |||||||||||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct 412 GGAAAAATGCTTACTTGAGCTTTATGGGCTTAAGCTAAAAGAACTACAATGCAAGGTTCG 471
Query 656 AACCGCGGTGAGCTCGGAATTCTGGCTACGTCTGAACTGTGCAGATGTCAG-TAGCCAAG 714
| | ||||||| |||||| |||||| ||| |||| |||||| || | | ||||||
Sbjct 472 GGCTGAGGTGAGCGCGGAATACTGGCTGCGTTTGAATTGTGCACAT-CCTGAAAGCCAAC 530
Query 715 TATTTGACTGGGGCATGATGCGGTTGCCTCGTCC-ATTTTATGGGGTTGGAGATCCTTTT 773
||| ||||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 531 TATATGACTGGGGCATGATGCGGTTGCCTCG-CCGAATGTATGGGGTTGGAGATCCTTTT 589
Query 774 GC-TATGGAAGCTGATGATCAGTTCAGAAAGAAGCGTGACGCTGAGAGGTTATCACGTTT 832
| ||||||||||||||||||||||||||| |||||||| || |||||||||| ||| ||
Sbjct 590 -CATATGGAAGCTGATGATCAGTTCAGAAACAAGCGTGATGCCGAGAGGTTATTACGGTT 648
Query 833 AGAAGAAGAGGAGAAGAATCTGATTGAAACTGCCA-AGAGGAAATTCTTTGCAGAAGTAC 891
|||||| |||||||||||||| |||||||| | || |||||||||||||||||||| |||
Sbjct 649 AGAAGAGGAGGAGAAGAATCTCATTGAAAC-GACACAGAGGAAATTCTTTGCAGAAATAC 707
Query 892 TCAATGCAGTACGTGAATTCCAGTTGCAAATTCAGGCGACTCAAAAACGCCGTAGGCAAA 951
||||||| || |||||||||||||| ||||||||||||||||| | |||| ||| |||||
Sbjct 708 TCAATGCTGTTCGTGAATTCCAGTTACAAATTCAGGCGACTCATAGACGCTGTAAGCAAA 767
Query 952 GGAATGATGGTGTGCAGGCTTGGCATGGGAGA-CAAAGACAACGCGCTACCCGTGCTGAA 1010
| ||||||||||| ||||| |||||| ||| | ||||| ||||| || ||||| ||||||
Sbjct 768 GAAATGATGGTGTCCAGGCCTGGCAT-GGAAAGCAAAGGCAACGTGCCACCCGAGCTGAA 826
Query 1011 AAGTTGAGGCTCATGGCCCTTAAGTCCGATGATCAAGAGGCATACATGAAACTAGTAAAG 1070
|| | ||| ||||||||||||| || ||||||||||||| |||||||||||||| ||||
Sbjct 827 AAACTAAGGATCATGGCCCTTAAATCTGATGATCAAGAGGAATACATGAAACTAGCAAAG 886
Query 1071 GAGAGTAAAAATGAAAGACTAACCACTCTTT--TAGAGGAGACAAACAAACTCCTTGCTA 1128
||||||||||| |||| ||||| | || ||| ||||||||||||||||| || ||| ||
Sbjct 887 GAGAGTAAAAACGAAAAACTAA-CTCT-TTTCCTAGAGGAGACAAACAAAATCTTTGTTA 944
Query 1129 ATTTGGGAGCTGCTGTTCAACGTCAGAAAGATGCTAAACTTCCGGAAGGCATTGATCTAC 1188
|||||||||||| || || |||||||||||||| |||||| | ||| ||| | ||||
Sbjct 945 GTTTGGGAGCTGCAGTCCAGCGTCAGAAAGATGCCAAACTTTCAGAAAACATCAAACTAC 1004
Query 1189 TTAAAGACTCAGAATCTGACTTGTCTGAACTTGATGCTCCAAGAAGTGAACCATTGCAGG 1248
| |||| ||||||||||||||| ||||| |||||||| | ||| | ||
Sbjct 1005 TGAAAGGCTCAGAATCTGACTTATCTGATGTTGATGCT-C----------CCA---C-GG 1049
Query 1249 ATCTGCTTCCTGATCAGGATATAGATATTACTGAGTCTGACAATAACGATGACTCTAATG 1308
|| |||||||||| || ||||| | || | ||| ||||||||||| ||||| |||||||
Sbjct 1050 ATGTGCTTCCTGACCAAGATATTGGGATCATTGACTCTGACAATAATGATGATTCTAATG 1109
Query 1309 ATTTACTAGAAGGAC-AGAGGCAGTATAACTCGGCTATCCATTCAATACAAGAGAAGGTG 1367
| ||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1110 ACTTACTAGAAGG-CGAGAGGCAGTATAACTTGGCTATTCATTCAATACAAGAGAAGGTG 1168
Query 1368 ACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAATTAGAAGGGCTT 1427
|| ||||||| || |||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 1169 ACAAAGCAGCCATCCCTTCTACAAGGTGGGGAACTAAGATCCTACCAATTAGAAGGGCTT 1228
Query 1428 CAATGGATGGTTTCTCTATTCAACAATAACCT-CAATGGAATATTAGCTGATGAGATGGG 1486
||||||||||| ||||||| |||||| | || ||||| || ||||||||||| |||||
Sbjct 1229 CAATGGATGGTCTCTCTATACAACAACGA-CTATAATGGCATTTTAGCTGATGAAATGGG 1287
Query 1487 TTTGGGAAAAACTATTCAAACAATTTCTCTGATTGCGTATCTTCTGGAGAA-TAAAGGTG 1545
||||||||| ||||| ||||||||| | ||||||||||||||||| || || |||| ||
Sbjct 1288 TTTGGGAAAGACTATCCAAACAATTGCACTGATTGCGTATCTTCTTGA-AAGTAAAAATG 1346
Query 1546 TGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGGTAAACGAGT 1605
||| ||||||| |||| ||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 1347 TGCATGGGCCTCATCTAATAGTGGCTCCAAAAGCTGTGCTACCAAATTGGGAAAATGAGT 1406
Query 1606 TTGCAACATGGGTACCAAGCATTGCAGCTTTTCTGTATGATGGACGTTTAGA-G-GAAAG 1663
|||||||||||| ||| |||||| | |||||||| || |||||| | | | | ||||
Sbjct 1407 TTGCAACATGGGCACCCAGCATTTCCGCTTTTCTTTACGATGGA---TCAAAGGAGAAAA 1463
Query 1664 GAA-AGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAATGTGTTGATAACCCATT 1722
||| | |||||| | | ||| ||| | | ||||||||||| || ||||||||||| |
Sbjct 1464 GAACTGAAATAAGAGCCAGAATAGCA-G-G-AGGAAAATTTAGCGTATTGATAACCCACT 1520
Query 1723 ATGATCTTATCATGAGAGATAAAGCATTTTTAAAGAAAATTGAGTGGTACTACATGATTG 1782
| ||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||
Sbjct 1521 ACGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGACTGGAATTACATGATTG 1580
Query 1783 TTGATGAAGGACATCGGCTGAAGAACCACGAATCTGCTCTAGCAAAGACTTTATTAACAG 1842
|||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
Sbjct 1581 TTGATGAAGGACATCGGCTGAAGAACCATGAATCTGCTCTAGCAAAGACTCTAGGAACTG 1640
Query 1843 GCTATCGTATAAAACGCAGACTTCTGTTGACCGGGACACCCATACAGAATAGCCTTCAAG 1902
|||| ||||| || ||||||||||| || || ||||| ||||||||||| || || ||||
Sbjct 1641 GCTACCGTATTAAGCGCAGACTTCTATTAACTGGGACTCCCATACAGAACAGTCTGCAAG 1700
Query 1903 AACTATGGTCATTGCTTAATTTTCTCCTTCCTCACATCTTTAACTCGGTTCAGAACTTCG 1962
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1701 AACTATGGTCGCTGCTTAATTTTCTCCTTCCTCACATCTTTAACTCGATTCAGAATTTCG 1760
Query 1963 AGGAATGGTTTAATGCTCCTTTCGCTGACCGTGGTAATGTCAGTCTCACGGATGAAGAGG 2022
| |||||||||||| |||||||||| || ||||| | || |||||| || ||||||||||
Sbjct 1761 AAGAATGGTTTAATACTCCTTTCGCAGAACGTGGCAGTGCCAGTCTTACAGATGAAGAGG 1820
Query 2023 AGCTCTTGATTATTCACCGCCTGCATCATGTTATAAGGCCGTTTATACTGAGAAGGAAAA 2082
|||| ||||||||| | || ||||||||||| || ||||||||| |||||||||||||||
Sbjct 1821 AGCTGTTGATTATTAATCGTCTGCATCATGTCATCAGGCCGTTTCTACTGAGAAGGAAAA 1880
Query 2083 AG-GACGAAGTAGAGAAATTCCTTCCTGGAAAGACACAGGTCATATTGAAGTGTGATATG 2141
| | ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1881 AAAGT-GAAGTTGAGAAATTCCTTCCTGGAAAGACACAAGTCATACTGAAGTGTGATATG 1939
Query 2142 TCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAA 2201
||||| ||||| ||| |||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1940 TCGGCTTGGCAAAAATTGTATTACAAACAAGTTACAGATGTAGGCAGGGTTGGTCTTCAT 1999
Query 2202 ACAGG-ATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGTGTTG 2260
| || | ||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2000 TCTGGCAA-TGGGAAATCAAAGAGTCTGCAGAATCTGACAATGCAATTAAGAAAGTGTTG 2058
Query 2261 TAACCATCCTTATCTATTTGTTGGAGGAGACTACAATATGTGGAAGAAACCTGAGATTGT 2320
||||||||| || ||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 2059 TAACCATCCGTACCTATTTGTTGGAGGAGATTATAACATGTGGAAGAAGCCTGAGATTGT 2118
Query 2321 GAGAGCTTCAGGGAAATTTGAACTCCTTGATCGTCTCCTTCCAAAACTGC-GCAAGGCTG 2379
|||||||||||| ||||| || || |||||||| |||||||| |||||| | ||| |||
Sbjct 2119 GAGAGCTTCAGGAAAATTCGAGCTACTTGATCGCCTCCTTCCGAAACTGAAGAAAG-CTG 2177
Query 2380 GACATAGGATTCTTCTCTTCTCCCAAATGACCCGTCTCATTGACGTTCTTGAGATATACT 2439
||||||| |||||||||||||| |||||||| |||||||| ||| |||| || || ||||
Sbjct 2178 GACATAGAATTCTTCTCTTCTCTCAAATGACTCGTCTCATCGACCTTCTCGAAATTTACT 2237
Query 2440 TGACACTTAATGATTACAAATACCTTAGACTCGATGGTACCACAAAGACAGATCAAAGAG 2499
||||||| ||||| |||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 2238 TGACACTCAATGACTACATGTACCTCAGACTCGACGGTACCACAAAGACAGACCAAAGAG 2297
Query 2500 GGCTTTTACTGAAGCAATTCAACGAGCCAGATTCTCCCTACTTTATGTTTCTTTTGAGCA 2559
|| ||||||||||||||||||| || || || ||||||||||| ||||||||||||||||
Sbjct 2298 GGGTTTTACTGAAGCAATTCAATGAACCGGAGTCTCCCTACTTCATGTTTCTTTTGAGCA 2357
Query 2560 CGCGTGCTGGAGGTCTCGGTTTGAACTTGCAAACTGCAGACACTGTTATTATCTTTGACA 2619
| ||||| || ||||| ||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct 2358 CACGTGCCGGTGGTCTTGGTTTGAACTTACAAACAGCAGACACTATTATTATATTTGACA 2417
Query 2620 GTGATTGGAACCCACAAATGGACCAACAGGCCGAGGATCGAGCTCATCGCATAGGGCAGA 2679
|||||||||| |||||||||||||| ||||| |||||||| || || || ||||||||||
Sbjct 2418 GTGATTGGAATCCACAAATGGACCAGCAGGCGGAGGATCGTGCCCACCGGATAGGGCAGA 2477
Query 2680 AGAAGGAAGTCAGAGTGTTTGTTTTGGTTAGCGTTGGCTCTGTTGAAGAAGTAATATTGG 2739
| |||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 2478 AAAAGGAAGTGAGAGTGTTTGTTTTGGTTAGTATTGGCTCTATTGAAGAGGTAATATTGG 2537
Query 2740 AGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAAGCTGGACTTTTCAACA 2799
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 2538 AGCGTGCAAAGCAAAAGATGGGCATTGATGCCAAAGTCATACAAGCAGGACTCTTCAACA 2597
Query 2800 CAACTTCCACTGCACAAGACAGAAGAGAGATGCTTGAAGAGATTATGCGTAAAGGAACAA 2859
||||||| ||||| |||||||| ||||||||||| |||||||| ||| | ||||||||||
Sbjct 2598 CAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAAGAGATCATGAGCAAAGGAACAA 2657
Query 2860 GCTCGCTCGGG-ACAGATGTCCCCAGTGAGAGAGAAATAAACCGGCTAGCGGCTCGTA-G 2917
|||| || ||| | |||||| || ||||||||||| || |||||||| || ||||| | |
Sbjct 2658 GCTCACTGGGGGA-AGATGTGCCAAGTGAGAGAGAGATTAACCGGCTCGCAGCTCGAACG 2716
Query 2918 TGAGGATGAATTTTGGATGTTTGAGCGAATGGATGAGGAGAGACG-AAGGAAGGAGAATT 2976
|||||||| |||||||||||||| | |||||| ||||| ||||| || |||||||| |
Sbjct 2717 -GAGGATGAGTTTTGGATGTTTGAACAAATGGACGAGGAAAGACGGAAA-AAGGAGAACT 2774
Query 2977 ACAGAGCC-CGTCTGATGCAAGAGCAAG-AAGTCCCTGAGTGGGCGTACACTACTCAGAC 3034
||| || | ||||| ||| ||||| ||| |||| ||||||||||| |||||| | ||||
Sbjct 2775 ACA-AGACACGTCTCATGGAAGAG-AAGGAAGTTCCTGAGTGGGCTTACACTTCAGAGAC 2832
Query 3035 CCAAGAGGAGAAGTTGAACAACGGAAAGTTCCATTTTGGTAGTGTCACAGGTAAGCGAAA 3094
||||| || ||| ||| | ||| ||||||||| || |||| ||||| || ||
Sbjct 2833 TCAAGAAGACAAG---AACGATTCAAAAAACCATTTTGGCAGCCTCACGGGTAAACGGAA 2889
Query 3095 ACGTAAAGA-G-ATTGTTTACAGCGACACACTAAGCGAGTTACAGTGGCTGAAAGCCG-T 3151
||| ||||| | | ||| |||||||| | ||||||| || |||||| ||||||| | |
Sbjct 2890 ACGAAAAGAAGCAGTGT--ACAGCGACTCTTTAAGCGATTTGCAGTGGATGAAAGC-GAT 2946
Query 3152 GGAGAG 3157
||||||
Sbjct 2947 GGAGAG 2952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140166041359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5